View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_15 (Length: 393)
Name: NF16832_low_15
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 39299580 - 39299209
Alignment:
| Q |
12 |
actgtgacatcctcagcttgattaaaacatgtcttatgactttccttttgtggtaaaggttcttgtgaagttgaacctaggaagctacttaacaaaggta |
111 |
Q |
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| T |
39299580 |
actgtgacatcctcagcttgattaaaacatgtcttatgactttccttttgtggtaaaggttcttgtgaagttgaacctaggaagctacttaacaaaggta |
39299481 |
T |
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| Q |
112 |
gaggctgaagatcgttttgattcatatcaatgtattgagaagaataaagttactttactttgcaagtgaataatagctacataatatagactcctattta |
211 |
Q |
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| T |
39299480 |
gaggctgaagatcgttttgattcatatcaatgtattgagaagaataaagtta-----ctttgcaagtgaataatagctacataatatagactcctattta |
39299386 |
T |
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| Q |
212 |
taa--------tatgacggtgtaaaatatatttacaccatatcaattaaatcttatttttaaatgcaaaacaataagtacaagaaattggcatgtaatag |
303 |
Q |
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| T |
39299385 |
taatatgacattatgacggtgtaaaatatatttacaccatatcaattaaatcttatttttaaatgcaaaacaataagttcaagaaattggcatgtaatag |
39299286 |
T |
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| Q |
304 |
aacatggaaaagtgtaggagtgaaagaaactgtgtgataggtggccagagaatattacagttgaatgaaaagggcct |
380 |
Q |
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| T |
39299285 |
aacatggaaaagtgtaggagtgaaagaaattgtgtgataggtggccagagaatattacagttgaatgaaaagggcct |
39299209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 26879540 - 26879392
Alignment:
| Q |
12 |
actgtgacatcctcagcttgattaaaacatgtcttatgactttccttttgtggtaaaggttcttgtgaagttgaacctaggaagctacttaacaaaggta |
111 |
Q |
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| T |
26879540 |
actgtgacatcctcagcttgattgaaaaatgatttatgactttcattttgtggtaaaggttcttgtagagttgaacctaggaagctacttagcaaaggta |
26879441 |
T |
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| Q |
112 |
gaggctgaagatcgttttgattcatatcaatgtattgagaagaataaag |
160 |
Q |
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|||| || ||||||||||||| |||||||| |||| |||||||| |||| |
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| T |
26879440 |
gaggttgtagatcgttttgatccatatcaaggtatagagaagaaaaaag |
26879392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 380
Target Start/End: Complemental strand, 26878964 - 26878880
Alignment:
| Q |
296 |
tgtaatagaacatggaaaagtgtaggagtgaaagaaactgtgtgataggtggccagagaatattacagttgaatgaaaagggcct |
380 |
Q |
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| T |
26878964 |
tgtaatagaacatggaaaagtgtaggagtgaagcaaattgtgttataggtggtcgtagaatattacagttgaatgaaaagggcct |
26878880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 26879364 - 26879328
Alignment:
| Q |
181 |
ataatagctacataatatagactcctatttataatat |
217 |
Q |
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| T |
26879364 |
ataataactacataatatagactcctatttagaatat |
26879328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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