View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_17 (Length: 388)
Name: NF16832_low_17
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 89 - 372
Target Start/End: Original strand, 46554648 - 46554920
Alignment:
| Q |
89 |
caacttaccttgttaatgaaatcatgtgattggagagtggccttataattagtagcaatagtttctttgaaggaagggtaaagagaaagcgttttttcaa |
188 |
Q |
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| T |
46554648 |
caacttaccttgttaatgaaatcatgtgattggagagtggccttataattaatagcaatagtttctttgaaggaagggtaaagagaaagcgttttttcaa |
46554747 |
T |
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| Q |
189 |
cccaaatagcgtatgcagaagacaaggaaggaccaccggcgggagcagcgtctttaagcacatgggaaacgaggtgagaggacaaggagttaagatgttg |
288 |
Q |
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| T |
46554748 |
cccaaatagcgtatgcagaagacaaggaaagaccac-----------gcgtctttaagcacatgggaaacgaggtgagaggacaaggagttaagatggtg |
46554836 |
T |
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| Q |
289 |
gacggattctgatccgaggaaggagagaagctgacgttgagtgggaccctcggaaccagcagtgaccatactgagcgtagtttg |
372 |
Q |
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| T |
46554837 |
gatggattctgatccgaggaaggagagaagctgacgttgagtgggaccctcggaaccagcagtgaccatactgagcgtagtttg |
46554920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 350
Target Start/End: Complemental strand, 46531574 - 46531318
Alignment:
| Q |
94 |
taccttgttaatgaaatcatgtgattggagagtggccttataattagtagcaatagtttctttgaaggaagggtaaagagaaagcgttttttcaacccaa |
193 |
Q |
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| T |
46531574 |
taccttgtttatgaaatcaagtgatctgagagtggcaaaataattagtatcaacaatttctttgaaggaagggtaaagagaaagggatttttcaaaccac |
46531475 |
T |
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| Q |
194 |
atagcgtatgcagaagacaaggaaggaccaccggcgggagcagcgtctttaagcacatgggaaacgaggtgagaggacaaggagttaagatgttggacgg |
293 |
Q |
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| T |
46531474 |
acagagttgacaaaagacaactgtggtccaccaaagggagcagcgtcatcaagcacagaggtaaagaggtgagtggataaggagttgagatgatcaatgg |
46531375 |
T |
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| Q |
294 |
attctgatccgaggaaggagagaagctgacgttgagtgggaccctcggaaccagcag |
350 |
Q |
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| T |
46531374 |
attttgaaccaaggaaggagagaagctgacattgcgtcggaccctcggaaccggcag |
46531318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 46469957 - 46469889
Alignment:
| Q |
124 |
agtggccttataattagtagcaatagtttctttgaaggaagggtaaagagaaagcgttttttcaaccca |
192 |
Q |
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| T |
46469957 |
agtggctttataatcagtaaccattgtttctttgaaggaaggttgaagagaaagggtttgatcaaccca |
46469889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 46550126 - 46550190
Alignment:
| Q |
124 |
agtggccttataattagtagcaatagtttctttgaaggaagggtaaagagaaagcgttttttcaa |
188 |
Q |
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| T |
46550126 |
agtggccttataatcagtagccatagttttttcaaaggaaggttgaagagaaagggtttgttcaa |
46550190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 9693228 - 9693292
Alignment:
| Q |
128 |
gccttataattagtagcaatagtttctttgaaggaagggtaaagagaaagcgttttttcaaccca |
192 |
Q |
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| T |
9693228 |
gccttataatcagtagacatggtttctttgaaggaaggttgaagagaaagggttttctctaccca |
9693292 |
T |
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