View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_19 (Length: 371)
Name: NF16832_low_19
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 34260213 - 34259947
Alignment:
| Q |
17 |
aaaaagcttgtgttggaatctaaagagaatgcacgtagtagcagtaaagaccgtatattttgcagtgtatggggtgtgggacccaaactgtaaaaggcgt |
116 |
Q |
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| T |
34260213 |
aaaaagcttgtgttggaatctaaagagaatgcacgtagtagcagtaaagaccgtatattttgcagtgtatggggtgtgggacccaaactgtaaaagacat |
34260114 |
T |
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| Q |
117 |
taaaattctcttgattctatttctatttctagttgtttccgaatttatcaaaagtgtgctaagaaagtttttgtgtcgtgtttcaagtttaggagacatg |
216 |
Q |
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| T |
34260113 |
taaaattctcttgattctatttctatttctagttgtttccgaatttatcaaaagtgtgctaagaaagtttttgttttgtgtttcaagtttaggagacatg |
34260014 |
T |
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| Q |
217 |
tttggttttggcgggaataatttaggcataagaccatttcttttttatggactcgtgtttaaaatta |
283 |
Q |
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| T |
34260013 |
tttggttttggcgggaatgatttagacataagaccatttcttttttatggactcgcgtttaaaatta |
34259947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 275 - 364
Target Start/End: Complemental strand, 34259565 - 34259476
Alignment:
| Q |
275 |
ttaaaattaagtggtgtggaaagataatgtacattaaattacattgttctccttttgttttgtgtaccaccgtctcaacaacctttgctt |
364 |
Q |
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| T |
34259565 |
ttaaaattaagtggtgtgaaaagataatgtacattaaattacattgttctccttttgttttgtataccaccatctcaacaacctttgctt |
34259476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 34268465 - 34268368
Alignment:
| Q |
143 |
ttctagttgtttccgaatttatcaaaagtgtgctaagaaagtttttgtgtcgtgtttcaagtttaggagacatgtttggttttggcgggaataatttag |
241 |
Q |
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| T |
34268465 |
ttctagttgtttccaaattgatcaaaagggtactagaaaagtttt-gtgttgtgtttcaaatctaggccacatatttggttttggcgggaataatttag |
34268368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 34268575 - 34268540
Alignment:
| Q |
17 |
aaaaagcttgtgttggaatctaaagagaatgcacgt |
52 |
Q |
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| T |
34268575 |
aaaaagcttgtgttggaatctaaagagaatccacgt |
34268540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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