View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_23 (Length: 333)
Name: NF16832_low_23
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 168 - 320
Target Start/End: Original strand, 1227027 - 1227179
Alignment:
| Q |
168 |
gttaatcatatatccagtacttaaatatatgaaggagtaatatagaggacctttcaaaaataagagcaagtggaatagtggtagctgctgcgaaaatgag |
267 |
Q |
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| T |
1227027 |
gttaatcatatatcccgtacttaaatatatgaaggagtaatatagaggacctttcaaaaataagagcaagtggaatagtggtagctgctgcgaaaatgag |
1227126 |
T |
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| Q |
268 |
acggtaagctgtaagaaccctaacactcattccatcgtttatagcaagtttgt |
320 |
Q |
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| T |
1227127 |
acggtaagctgtaagaaccctaacactcattccatcgtttatagcaaatttgt |
1227179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 1226873 - 1226965
Alignment:
| Q |
14 |
agggtgatgaagtttatgtaatcttacccaaatagaccacaaaagaatgacataaaaactaccctccaagtcaactgtggtctattcttcctg |
106 |
Q |
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| T |
1226873 |
agggtgatgaagtttatgtaatcttacccaaatagaccacaaaagaatgacataaaaactaccctccaagtcaactgtggtctattcttcctg |
1226965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 9837954 - 9838061
Alignment:
| Q |
213 |
aggacctttcaaaaataagagcaagtggaatagtggtagctgctgcgaaaatgagacggtaagctgtaagaaccctaacactcattccatcgtttatagc |
312 |
Q |
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| T |
9837954 |
aggacctttcaaaaataatagcaattggaatagtggtagctgttgcgaaaatgagacggtaagcagtaagtactttgacactcattccattgttagtggc |
9838053 |
T |
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| Q |
313 |
aagtttgt |
320 |
Q |
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| T |
9838054 |
aagtttgt |
9838061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 9837782 - 9837856
Alignment:
| Q |
32 |
taatcttacccaaatagaccacaaaagaatgacataaaaactaccctccaagtcaactgtggtctattcttcctg |
106 |
Q |
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| T |
9837782 |
taatcttacccaaatagaccacaaaaaaatgacataaaaaccaccctccaagtgagctttggtctattcttcctg |
9837856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 9849824 - 9849928
Alignment:
| Q |
216 |
acctttcaaaaataagagcaagtggaatagtggtagctgctgcgaaaatgagacggtaagctgtaagaaccctaacactcattccatcgtttatagcaag |
315 |
Q |
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| T |
9849824 |
acctttcaaaaaaaagagcaagtagaatagtggtagctgctgcgaacataagacggtaagcaataggtactttgacattcattccatcgttaatggcaag |
9849923 |
T |
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| Q |
316 |
tttgt |
320 |
Q |
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||||| |
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| T |
9849924 |
tttgt |
9849928 |
T |
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