View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_25 (Length: 308)
Name: NF16832_low_25
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 5050962 - 5050671
Alignment:
| Q |
1 |
gaagttatgtgaaggtgatgttgtgttcttgcaaagtgctcatggaatatttgttggaggcttgaagattgataagattgattgtgttggtcattggatt |
100 |
Q |
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| T |
5050962 |
gaagttatgtgaaggtgatgttgtgttcgtgcaacgtgctcatggaatatttgttggaggcttgaagattgat---------tgtgttggtcattggatt |
5050872 |
T |
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| Q |
101 |
catggtttcaattgttgtaaatgattttttgatattccattgtggcctattccaatccatccataacatagcataagatcgttatgtagaattgttaaca |
200 |
Q |
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| T |
5050871 |
catggtttcaattgttgtaaatgattttttgatattccattgtggcctattccaatccatccataacatagcataacatccttatgtagaattgttaaca |
5050772 |
T |
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| Q |
201 |
aaatttgtgtgg---gtagcatattagcactggtataagtcccacatcggggagaatagctaaagctgtgtgggaaagtggttataaaatgaaagcctat |
297 |
Q |
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| T |
5050771 |
aaatttgtgtgggtagtagcatattagcactggtataagtcccacatcggggagaatagctgaagctgtgtgggaaagtggttataaaatgaaagcctat |
5050672 |
T |
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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 51274658 - 51274824
Alignment:
| Q |
14 |
ggtgatgttgtgttcttgcaaagtgctcatggaatatttgttggaggcttgaagattgataagattgattgtgttggtcattggattcat-ggtttcaat |
112 |
Q |
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||||||||||||||||| ||| |||||||| |||| ||||||||| |||||||| | | ||||||| |||||||| || |||||||| ||||||||| |
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| T |
51274658 |
ggtgatgttgtgttcttacaacgtgctcatagaatttttgttggaaacttgaagactaacgagattgagggtgttggttatgggattcatgggtttcaat |
51274757 |
T |
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| Q |
113 |
tgttgtaaatgattt--tttgatattccattgtggcctattccaa-tccatccataacatagcataa |
176 |
Q |
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| T |
51274758 |
cgttgcaaatgatttcacttgatcttccattgtggccaactccaattccatccataccatagcataa |
51274824 |
T |
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