View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_26 (Length: 302)
Name: NF16832_low_26
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 11200027 - 11200312
Alignment:
| Q |
16 |
cagttagatgcataagggatcatttcgttagtcaaatttgtacaccctttatcataagtctatgattaaagtttcaaaatatatatcatatacatgtgat |
115 |
Q |
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| T |
11200027 |
cagttagatgcataagggatcatttcgttagtcaaatttgtacagcctttatcataagtctatgagtaaagtttcaaaatatatatcatatacatgtgat |
11200126 |
T |
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| Q |
116 |
gcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccctaagagatttggatg---------ttgtga |
206 |
Q |
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| T |
11200127 |
gcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgttgtgattcttgtga |
11200226 |
T |
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| Q |
207 |
acaaaatcaagacaaactttggctaatcaaaaccttccaacactactgatctagttgtactctctggtataatgtatgtgtctgtg |
292 |
Q |
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| T |
11200227 |
acaaaatcaagacaaactttggctaatcaaaaccttccaacactactgatctagttgtactctctagtataatgtatgtgtttgtg |
11200312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 11155568 - 11155663
Alignment:
| Q |
109 |
atgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccctaagagatttggatgttgt |
204 |
Q |
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| T |
11155568 |
atgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttgt |
11155663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 10794183 - 10794089
Alignment:
| Q |
113 |
gatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccctaagagatttggatgttgtgaa |
207 |
Q |
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| T |
10794183 |
gatgcatccattttgctgaacaacactgctactatcgtgagcgaactacaagctctcccaaatatcaactccataagaggtttgcaagttgtgaa |
10794089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 11110101 - 11110210
Alignment:
| Q |
110 |
tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccctaagagatttggatgttgtgaaca |
209 |
Q |
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| T |
11110101 |
tgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaatc |
11110200 |
T |
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| Q |
210 |
aaatcaagac |
219 |
Q |
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| T |
11110201 |
aaatcaagac |
11110210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 11136953 - 11137059
Alignment:
| Q |
110 |
tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccctaagagatttggatgttgtgaaca |
209 |
Q |
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| T |
11136953 |
tgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttggatgttgtgaatc |
11137052 |
T |
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| Q |
210 |
aaatcaa |
216 |
Q |
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| T |
11137053 |
aaatcaa |
11137059 |
T |
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