View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_28 (Length: 287)
Name: NF16832_low_28
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 13447406 - 13447651
Alignment:
| Q |
22 |
ctgacccaccaccgacagacgcctcaacgacgacaccaatggatcaccaacacgacaagagatccatcgaaaa-aatacaacagtgttggtgcacagatt |
120 |
Q |
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| T |
13447406 |
ctgacccaccaccgacagacgcctcaacgacgacaccaatggatcatcaacacgacaagagatccatcgaaaaaaatacaacagtgttggtgcacagatt |
13447505 |
T |
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| Q |
121 |
gtagatgattgaaaaccagacatgaaagaaatgcattcgaaccaaacttggtatgtatagcgaatgaaacaaattaggggctaatcttcggtcnnnnnnn |
220 |
Q |
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| T |
13447506 |
gtagatgattgaaaaccagacatgaaagaaatgcattcgaaccaaacttggtatgtatagcgaatgaaacaaattaggggctaatcttcggtcaaaagaa |
13447605 |
T |
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| Q |
221 |
nnnnnnnnngacaggatcccacaaaatctagagatttaaagtacag |
266 |
Q |
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| T |
13447606 |
aaagaaacagacaggatcccacaaaatctagagatttaaagtacag |
13447651 |
T |
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