View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16832_low_3 (Length: 709)

Name: NF16832_low_3
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16832_low_3
NF16832_low_3
[»] chr8 (4 HSPs)
chr8 (16-705)||(38341641-38342311)
chr8 (568-705)||(38333888-38334025)
chr8 (357-386)||(16515088-16515117)
chr8 (413-481)||(45000131-45000198)
[»] chr3 (5 HSPs)
chr3 (413-516)||(37549926-37550029)
chr3 (278-329)||(31148873-31148924)
chr3 (447-490)||(20642070-20642114)
chr3 (269-322)||(44442264-44442321)
chr3 (413-457)||(48507450-48507494)
[»] chr2 (7 HSPs)
chr2 (413-516)||(37422857-37422960)
chr2 (339-420)||(21449705-21449781)
chr2 (309-386)||(41873714-41873792)
chr2 (422-470)||(13728636-13728685)
chr2 (337-374)||(37423155-37423192)
chr2 (419-515)||(41873557-41873654)
chr2 (413-487)||(34957894-34957970)
[»] chr4 (8 HSPs)
chr4 (413-517)||(16502583-16502688)
chr4 (413-516)||(53504679-53504782)
chr4 (423-470)||(38870592-38870639)
chr4 (413-487)||(40020673-40020752)
chr4 (413-509)||(3479153-3479248)
chr4 (354-386)||(38870697-38870729)
chr4 (269-327)||(16502241-16502299)
chr4 (354-384)||(49445045-49445075)
[»] chr1 (6 HSPs)
chr1 (414-509)||(19607208-19607304)
chr1 (408-484)||(11046900-11046978)
chr1 (415-517)||(13818793-13818895)
chr1 (334-386)||(40077026-40077078)
chr1 (351-386)||(50845719-50845754)
chr1 (269-322)||(46395985-46396042)
[»] scaffold0493 (1 HSPs)
scaffold0493 (403-470)||(4167-4234)
[»] chr6 (3 HSPs)
chr6 (269-328)||(779494-779553)
chr6 (309-383)||(10525381-10525454)
chr6 (413-481)||(10525257-10525324)
[»] chr7 (3 HSPs)
chr7 (413-459)||(45249228-45249274)
chr7 (334-381)||(8530377-8530423)
chr7 (413-500)||(44208508-44208595)
[»] chr5 (10 HSPs)
chr5 (413-515)||(29465695-29465797)
chr5 (420-516)||(15047156-15047253)
chr5 (412-457)||(29075674-29075719)
chr5 (261-306)||(37910342-37910387)
chr5 (291-330)||(19176059-19176098)
chr5 (265-323)||(22771161-22771219)
chr5 (413-483)||(31673991-31674063)
chr5 (447-490)||(21524218-21524262)
chr5 (447-490)||(21534778-21534822)
chr5 (334-386)||(37910257-37910309)


Alignment Details
Target: chr8 (Bit Score: 590; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 16 - 705
Target Start/End: Complemental strand, 38342311 - 38341641
Alignment:
Q  16 aatatatgccacgccacaacatcagcatgcattcacgcccaaagcaccaactctagattatagctcagctttgttccagctgctatccgccaaagaaatt 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342311 aatatatgccacgccacaacatcagcacgcattcacgcccaaagcaccaactctagattatagctcagctttgttccagctgctatccgccaaagaaatt 38342212  T
Q  116 ataattctcagctgctctctcaaccaactcgaagctttatcttttcttctacctcaaaataagcactaccctgacatgtgtaaatatatgttattatgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342211 ataattctcagctgctctctcaaccaactcgaagctttatcttttcttctacctcaaaataagcactaccctgacatgtgtaaatatatgttattatgat 38342112  T
Q  216 ttgtcatctttttcacgtctctgatttgtgtttctgattgtgtagttgatttgtgttgggatatagaataatggctaattagagtagttaatctagttaa 315  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342111 ttgtcatctttttcacttctctgatttgtgtttctgattgtgtagttgatttgtgttgggatatagaataatggctaattagagtagttaatctagttaa 38342012  T
Q  316 gagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||                  ||||    
T  38342011 gagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataggagaacac-aaaggttag------------------atat 38341931  T
Q  416 tgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaaca 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341930 tgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaaca 38341831  T
Q  516 atacatcattttatttgcaatctttctcagaatgctaacgggagnnnnnnncctctaaagaagcataaaagatctcctattgttggtgtggaggataaag 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341830 atacatcattttatttgcaatctttctcagaatgctaacgggagaaaaaaacctctaaagaagcataaaagatctcctattgttggtgtggaggataaag 38341731  T
Q  616 gtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacccatttaacaaggctgttgaggttgatgatgtcc 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341730 gtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacccatttaacaaggctgttgaggttgatgatgtcc 38341641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 568 - 705
Target Start/End: Complemental strand, 38334025 - 38333888
Alignment:
Q  568 ctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaa 667  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| |||||||| | || ||||||||||||| | || |||   ||||    
T  38334025 ctctaaagaagcataaaatatcttctattgctggtgtggaggataaaggtggtaaatcctcaaggaaaccaagaaaacaagcagctagtaaacctactaa 38333926  T
Q  668 aaacccatttaacaaggctgttgaggttgatgatgtcc 705  Q
    |||| |||| ||  |||||||| | | |||||||||||    
T  38333925 aaactcattgaatgaggctgttaacggtgatgatgtcc 38333888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 386
Target Start/End: Original strand, 16515088 - 16515117
Alignment:
Q  357 agagtatgtgtataaataagagaacacaaa 386  Q
    ||||||||||||||||||||||||||||||    
T  16515088 agagtatgtgtataaataagagaacacaaa 16515117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 413 - 481
Target Start/End: Complemental strand, 45000198 - 45000131
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 481  Q
    |||||| ||||||||||||||| |||||| ||| |||||  |||| |||||||||||| ||||| ||||    
T  45000198 tattgtgaaggggaaacccttg-aggagatattctctcctgttctatcctatttcttaataaaattgtt 45000131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 413 - 516
Target Start/End: Original strand, 37549926 - 37550029
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 512  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||| || |||||||||   ||||||||||||||||||||||| ||| |||||||| ||    
T  37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctattccattccattcttgggttccta 37550025  T
Q  513 acaa 516  Q
    ||||    
T  37550026 acaa 37550029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 31148924 - 31148873
Alignment:
Q  278 atagaataatggctaattagagtagttaatctagttaagagttgttatagtc 329  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||| ||||    
T  31148924 atagaatagtggttaattagagtagttaaagtagttaagagttgttacagtc 31148873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 447 - 490
Target Start/End: Complemental strand, 20642114 - 20642070
Alignment:
Q  447 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 490  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||    
T  20642114 tctcccattctttcctattttcttaataaaagttttctttctatt 20642070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 44442321 - 44442264
Alignment:
Q  269 tgttgggatatagaataatggctaatta----gagtagttaatctagttaagagttgt 322  Q
    |||| |||||||||||||||||||||||    || |||||||| ||||||||||||||    
T  44442321 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 44442264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 413 - 457
Target Start/End: Original strand, 48507450 - 48507494
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccattct 457  Q
    |||||| || ||||||||||||||||||||||| ||||| |||||    
T  48507450 tattgtgaaagggaaacccttggaggagagattctctcctattct 48507494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 413 - 516
Target Start/End: Complemental strand, 37422960 - 37422857
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 512  Q
    |||||| |||| ||||||||||||||||||||| ||||| ||||| |||||||||||  |||||||||||||||| |   |||||||| |||||||| ||    
T  37422960 tattgtgaaggtgaaacccttggaggagagattctctcctattctatcctatttcttcataaaagtgttctttctttggaattcaatttttgggttccta 37422861  T
Q  513 acaa 516  Q
    ||||    
T  37422860 acaa 37422857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 339 - 420
Target Start/End: Complemental strand, 21449781 - 21449705
Alignment:
Q  339 gttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaa 420  Q
    |||||| |||||  |||||||||||||||||||||| ||||||| |||| ||    ||||||||||||||||||||||||||    
T  21449781 gttatttggattacttagagagtatgtgtataaataggagaaca-aaaatgt----taaagagtatcttttgaatattgtaa 21449705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 41873792 - 41873714
Alignment:
Q  309 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaa-taagagaacacaaa 386  Q
    ||||||||||||| |||||| ||| |   ||||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  41873792 tagttaagagttgctatagttagttacaaagttatttggattagttagagagtatgtgtataaattaggagaacacaaa 41873714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 13728636 - 13728685
Alignment:
Q  422 ggggaaacccttggaggagaga-ttatctcccattctttcctatttctta 470  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  13728636 ggggaaacccttggaggagatatttctctcctattctttcctatttctta 13728685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 37423192 - 37423155
Alignment:
Q  337 tagttattcggattggttagagagtatgtgtataaata 374  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  37423192 tagttatttggattagttagagagtatgtgtataaata 37423155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 515
Target Start/End: Complemental strand, 41873654 - 41873557
Alignment:
Q  419 aaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttcttaaca 515  Q
    ||||||||||| |||||||||||||||||||||   |||||| || ||||||| |  |   |||||||||||||||||||  | |||||||| |||||    
T  41873654 aaaggggaaactcttggaggagagattatctcctggtctttcttattttcttaatttagtggttctttctattccattcagctcttgggttcctaaca 41873557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 413 - 487
Target Start/End: Complemental strand, 34957970 - 34957894
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttc-ttagtaaaagtgttctttct 487  Q
    |||||| |||| | ||||||||||||||||| || ||||| ||| ||||||||||| ||| ||||||||||| ||||    
T  34957970 tattgtgaaggtgtaacccttggaggagagatttctctcctattatttcctatttctttattaaaagtgttcgttct 34957894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 413 - 517
Target Start/End: Original strand, 16502583 - 16502688
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctt 511  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||| || ||||||||| || ||||||||||||||    || ||||| |||||||| |    
T  16502583 tattgtgaaggggaaacccttggaggagagatttctctcctattctatcatatttcttaatataagtgttctttctaaagaatccaattcttgggttcct 16502682  T
Q  512 aacaat 517  Q
    ||||||    
T  16502683 aacaat 16502688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 516
Target Start/End: Original strand, 53504679 - 53504782
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 512  Q
    |||||| ||||||||||||||||||||| |||| || ||  |||| || |||||||||    ||||||| |||||||||||||||||| || ||||| ||    
T  53504679 tattgtgaaggggaaacccttggaggagtgattctcccctgttctatcatatttcttaaattaagtgttttttctattccattcaattatttggttccta 53504778  T
Q  513 acaa 516  Q
    ||||    
T  53504779 acaa 53504782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 423 - 470
Target Start/End: Complemental strand, 38870639 - 38870592
Alignment:
Q  423 gggaaacccttggaggagagattatctcccattctttcctatttctta 470  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  38870639 gggaaacccttgcaggagagattatctcccactctatcctatttctta 38870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 487
Target Start/End: Complemental strand, 40020752 - 40020673
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagatt-atctccc-attctttcctattt---cttagtaaaagtgttctttct 487  Q
    |||||| |||||||| |||||| |||||||||| ||||||| ||||||||||||||   |||| ||||||||||||||||    
T  40020752 tattgtgaaggggaatcccttgaaggagagatttatctccctattctttcctattttttcttaataaaagtgttctttct 40020673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 509
Target Start/End: Complemental strand, 3479248 - 3479153
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttc 509  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||  || |||||||||   |||||||||||||| ||  |||||||| ||||||||    
T  3479248 tattgtcaaggggaaacccttg-aggagagattctctcttattccatcatatttcttaaataaagtgttctttcttttgaattcaattcttgggttc 3479153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 38870729 - 38870697
Alignment:
Q  354 tagagagtatgtgtataaataagagaacacaaa 386  Q
    |||||||||||||||||||||||||||||||||    
T  38870729 tagagagtatgtgtataaataagagaacacaaa 38870697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 16502241 - 16502299
Alignment:
Q  269 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatag 327  Q
    |||| |||||||  |||||||| |||||| ||||||||  |||||||||||||||||||    
T  16502241 tgttaggatatattataatggccaattagtgtagttaaagtagttaagagttgttatag 16502299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 384
Target Start/End: Complemental strand, 49445075 - 49445045
Alignment:
Q  354 tagagagtatgtgtataaataagagaacaca 384  Q
    |||||||||||||||||||||||||||||||    
T  49445075 tagagagtatgtgtataaataagagaacaca 49445045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 414 - 509
Target Start/End: Complemental strand, 19607304 - 19607208
Alignment:
Q  414 attgtaaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttc 509  Q
    ||||| |||||||||||||||||||||||||| ||||| | |||||| || ||||||| | ||| |||||||| |||||||| |||||  |||||||    
T  19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatattccatccaattactgggttc 19607208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 484
Target Start/End: Original strand, 11046900 - 11046978
Alignment:
Q  408 ttgaatattgtaaaggggaaacccttggaggagaga-ttatctcccattctttccta-tttcttagtaaaagtgttctt 484  Q
    ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||||| ||||||    
T  11046900 ttgaacattgtgaaggggaaacccttggagtagagatttatctcctattctttcctattttcttaataaaagagttctt 11046978  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 415 - 517
Target Start/End: Complemental strand, 13818895 - 13818793
Alignment:
Q  415 ttgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaac 514  Q
    |||| ||||||||||||||| |||||||||| ||||||||| | || ||||||||  | ||||| |||||||| |   |||||||| ||||| || ||||    
T  13818895 ttgtgaaggggaaacccttgaaggagagattctctcccattttatcatatttcttcatgaaagttttctttctttcgaattcaattcttgggctcctaac 13818796  T
Q  515 aat 517  Q
    |||    
T  13818795 aat 13818793  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 40077026 - 40077078
Alignment:
Q  334 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 386  Q
    |||| |||||| ||||| ||||||||||||||| ||||||| |||||||||||    
T  40077026 agtttgttatttggattagttagagagtatgtgcataaataggagaacacaaa 40077078  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 386
Target Start/End: Complemental strand, 50845754 - 50845719
Alignment:
Q  351 ggttagagagtatgtgtataaataagagaacacaaa 386  Q
    ||||||||||||||||||||||||||| ||||||||    
T  50845754 ggttagagagtatgtgtataaataagaaaacacaaa 50845719  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 46395985 - 46396042
Alignment:
Q  269 tgttgggatatagaataatggc----taattagagtagttaatctagttaagagttgt 322  Q
    |||| |||||||||||||||||    |||||||| |||||||| ||||||||||||||    
T  46395985 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 46396042  T

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Target: scaffold0493 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 403 - 470
Target Start/End: Complemental strand, 4234 - 4167
Alignment:
Q  403 atcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttctta 470  Q
    |||||||||||||||| || |||||||||||| |||||||||| || || ||||| || |||||||||    
T  4234 atcttttgaatattgtgaatgggaaacccttgaaggagagattctcccctattctatcatatttctta 4167  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 779494 - 779553
Alignment:
Q  269 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagt 328  Q
    |||| |||||| ||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  779494 tgttaggatatggaataatggctaaatagagtagttaatgtagttaagagctgctatagt 779553  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 10525454 - 10525381
Alignment:
Q  309 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacac 383  Q
    |||||| ||||||||| ||  ||| |||| ||| || ||||| |||||||||| |||||||||||||||||||||    
T  10525454 tagttatgagttgttagaga-agttagtttgttttttggattagttagagagtgtgtgtataaataagagaacac 10525381  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 413 - 481
Target Start/End: Complemental strand, 10525324 - 10525257
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 481  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||| ||| |||||||| ||||| ||||    
T  10525324 tattgtgaaggggaaacccttg-aggagagattttctcgtattctatccaatttcttaataaaattgtt 10525257  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 459
Target Start/End: Complemental strand, 45249274 - 45249228
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccattcttt 459  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||    
T  45249274 tattgtgaaggggaaacccttggaggatagattttctcccattcttt 45249228  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 8530423 - 8530377
Alignment:
Q  334 agttagttattcggattggttagagagtatgtgtataaataagagaac 381  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  8530423 agttagttatttggattagttagagag-atgtgtataaataagagaac 8530377  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 500
Target Start/End: Complemental strand, 44208595 - 44208508
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaatt 500  Q
    |||||| |||||||||| ||||||||| ||||| ||||  ||||| || | |||||||   ||||| ||||||||||| |||||||||    
T  44208595 tattgtgaaggggaaactcttggaggaaagattctctcttattctatcgtgtttcttaaataaagtattctttctatttcattcaatt 44208508  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 515
Target Start/End: Original strand, 29465695 - 29465797
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 512  Q
    |||||| ||||||||||  |||||||||||||| |||     ||| || |||||||||   ||||||||||||||||||||||||||| |||| ||| ||    
T  29465695 tattgtgaaggggaaacggttggaggagagattctcttttcgtctatcatatttcttaaataaagtgttctttctattccattcaattcttggattccta 29465794  T
Q  513 aca 515  Q
    |||    
T  29465795 aca 29465797  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 516
Target Start/End: Original strand, 15047156 - 15047253
Alignment:
Q  420 aaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaa 516  Q
    |||||||||||||||||||||||| || ||||| ||||||| ||| || | | |||||||||||||||| |   || ||||| |||||||| ||||||    
T  15047156 aaggggaaacccttggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcctaacaa 15047253  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 29075674 - 29075719
Alignment:
Q  412 atattgtaaaggggaaacccttggaggagagattatctcccattct 457  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||    
T  29075674 atattgtgaaggggaaaaccttggaggagagattatctccaattct 29075719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 37910387 - 37910342
Alignment:
Q  261 ttgatttgtgttgggatatagaataatggctaattagagtagttaa 306  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  37910387 ttgagttgtgttgggatgtagaataatgactaattagagtagttaa 37910342  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 330
Target Start/End: Original strand, 19176059 - 19176098
Alignment:
Q  291 taattagagtagttaatctagttaagagttgttatagtca 330  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19176059 taattagagtagttaaagtagttaagagttgttatagtca 19176098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 22771161 - 22771219
Alignment:
Q  265 tttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgtt 323  Q
    |||||||| ||||||| |||||||||||| ||||||||||||  ||| || ||||||||    
T  22771161 tttgtgttaggatataaaataatggctaactagagtagttaaattagctatgagttgtt 22771219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 483
Target Start/End: Original strand, 31673991 - 31674063
Alignment:
Q  413 tattgtaaaggggaaacccttggaggagagattatctcccat--tctttcctatttcttagtaaaagtgttct 483  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||  | | |||||||| ||| ||||||||||||    
T  31673991 tattgtgaaggggaaccccttggaggagagattctctcctattatatatcctattttttaataaaagtgttct 31674063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 447 - 490
Target Start/End: Original strand, 21524218 - 21524262
Alignment:
Q  447 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 490  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  21524218 tctcccattctttcctattttcttaataaatgtgttctttctatt 21524262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 447 - 490
Target Start/End: Original strand, 21534778 - 21534822
Alignment:
Q  447 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 490  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  21534778 tctcccattctttcctattttcttaataaatgtgttctttctatt 21534822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 37910309 - 37910257
Alignment:
Q  334 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 386  Q
    ||||||||||| ||||| |||| |||||||||| ||||||| ||||| |||||    
T  37910309 agttagttatttggattagttaaagagtatgtgcataaataggagaatacaaa 37910257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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