View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_33 (Length: 253)
Name: NF16832_low_33
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 2154677 - 2154441
Alignment:
| Q |
17 |
atgtcactagtgtcgaagcctctaaataaatattgaatcattctatgaattgattcataagatttgtttattcttttagtatatatttggtgatttgaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2154677 |
atgtcactagtgtcgaagcctctaaataaatattgaatcattctatgcattgattcataagatttgtttattcttgtagtatatatttggtgatttgaat |
2154578 |
T |
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| Q |
117 |
caactatttggtaaaaatacatgtgagtaactttaacataaaatatagggttaggaattgctctttaatgcttccaatattggagaagacaggttgctcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2154577 |
caactatttggtaaaaatacatgtgagtaactttaacataaaatatagggttaggaattgctctttaatgcttccaatattggagaagacaggttgctcc |
2154478 |
T |
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| Q |
217 |
taagaagtcattaaattttttatggtaacataaaaat |
253 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2154477 |
taagaagtcattaaattttttatggtaacataaaaat |
2154441 |
T |
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