View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16832_low_35 (Length: 251)
Name: NF16832_low_35
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 38341657 - 38341522
Alignment:
| Q |
13 |
tgaggttgatgatgtcctcgaccctccttatgagtttgatggagatgtacttgaagaaaacgatgatgaggacgaagtggattattcattcaataagaaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38341657 |
tgaggttgatgatgtcctcgaccctccttatgagtttgatggagatgtacttgaagaaaacgatgatgaggacgaagtggattattcattcaatatgaaa |
38341558 |
T |
|
| Q |
113 |
agagcatcgacgagttcaaagaagaaatcagtggct |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38341557 |
agagcatcgacgagttcaaagaagaaatcagtggct |
38341522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 38333898 - 38333769
Alignment:
| Q |
19 |
tgatgatgtcctcgaccctccttatgagtttgatggagatgtacttgaagaaaacgatgatgaggacgaagtggattattcattcaataagaaaagagca |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||| ||||| ||||||||||||| ||| |||| ||| ||| |
|
|
| T |
38333898 |
tgatgatgtcctcgaccctccttatgttattgatggagatgaacttgaagaaaatgacgatgatgacgacgtggattattcatccaagaagacaagcgca |
38333799 |
T |
|
| Q |
119 |
tcgacgagttcaaagaagaaatcagtggct |
148 |
Q |
| |
|
|| || |||||||||||||||||||||||| |
|
|
| T |
38333798 |
tcaacaagttcaaagaagaaatcagtggct |
38333769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 38341488 - 38341427
Alignment:
| Q |
182 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38341488 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctc |
38341427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 38333736 - 38333675
Alignment:
| Q |
182 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctc |
243 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
38333736 |
ggctaatgatgattcagaaaaggttactgaagaacctcctaaaaagttcccccatgcatctc |
38333675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 25379342 - 25379419
Alignment:
| Q |
63 |
ttgaagaaaacgatgatgaggacgaagtggattattcattcaataagaaaagagcatcgacgagttcaaagaagaaat |
140 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| |||||| || ||||||||||||| || | |||||| ||||||| |
|
|
| T |
25379342 |
ttgaagaaaatgatgacgaggacgaagtggataattcatctaagaagaaaagagcattaacaaattcaaaaaagaaat |
25379419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University