View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_43 (Length: 233)
Name: NF16832_low_43
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_43 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 33945052 - 33944820
Alignment:
| Q |
1 |
gggaagcattggcaggcaaacctaatgaaccagctttgaggccttataagcctcctcctgcccgtcgttcattggagtctgatactgctgcacctgcaac |
100 |
Q |
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| T |
33945052 |
gggaagcattggcaggcaaacctaatgaaccagctttgaggccttataagcctcctcctgcccgtcgttcattggagtctgatactgctgcacctgcaac |
33944953 |
T |
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| Q |
101 |
ttcctcagccccagctccagggaaatacattcccaagttccggcgaggaggagcttaaaccacacgagctctttctcatctattttttcattacaaaact |
200 |
Q |
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| T |
33944952 |
ttcctcagccccagctccagggaaatacattcccaagttccggcgaggaggagcttaaaccacacgagctctttctcatctattttttcattacaaaact |
33944853 |
T |
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| Q |
201 |
tactatacatgccatttgatcatctttttcctt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33944852 |
tactatacatgccatttgatcatctttttcctt |
33944820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 40158744 - 40158697
Alignment:
| Q |
106 |
cagccccagctccagggaaatacattcccaagttccggcgaggaggag |
153 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
40158744 |
cagccccagctccagggaagtatgttcccaagttccggcgaggaggag |
40158697 |
T |
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