View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_44 (Length: 227)
Name: NF16832_low_44
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41387 - 41162
Alignment:
| Q |
1 |
ttctcaagttatccaaacataaaaaagtattgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcacttaa |
100 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41387 |
ttctgaagttatccaaacataaaaa-gtattgtgaaaccacctttcaaaaagctaactcgcgttggaggctacgaaacgcggaaccaaacgagcacttaa |
41289 |
T |
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| Q |
101 |
aaccattattgattattttggatacactctctctcattc-----tcaatttccataaagcagtatcctcctaggttactcacacgcctccttcattccct |
195 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41288 |
aaccattattgattattttggatacactctctctctctcagctctcaatttccataaagcagtatcctcctaggttactcacatgcctccttcattccct |
41189 |
T |
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| Q |
196 |
gccacatttactctaacatattgaagt |
222 |
Q |
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||||||||||||||||||||||||||| |
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| T |
41188 |
gccacatttactctaacatattgaagt |
41162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 42752950 - 42753036
Alignment:
| Q |
13 |
ccaaacataaaaaagtattgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcactta |
99 |
Q |
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| T |
42752950 |
ccaaacatcaaaaagtatgttgaaaccacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgcggaaccaaacaagcactta |
42753036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 38305334 - 38305250
Alignment:
| Q |
13 |
ccaaacataaaaaagtattgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcact |
97 |
Q |
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| T |
38305334 |
ccaaacatgaaaaagtatgctgaaaccacgtttcaaaaagcaaactcgtgtttgaggcttccaaacgcggaaccaaacaagcact |
38305250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 54487925 - 54487842
Alignment:
| Q |
13 |
ccaaacataaaaaagtattgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcac |
96 |
Q |
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| T |
54487925 |
ccaaacatcaaaaagtatgttgaaaccacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgtggaaccaaacaagcac |
54487842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 42599852 - 42599786
Alignment:
| Q |
33 |
tgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcactta |
99 |
Q |
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| T |
42599852 |
tgaaaccacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgcggaaccaaacaagcactta |
42599786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 31247047 - 31247131
Alignment:
| Q |
13 |
ccaaacataaaaaagtattgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcact |
97 |
Q |
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| T |
31247047 |
ccaaacatcaaaaagtatgctaaaatcacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgcggaaccaaacaagcact |
31247131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 4569746 - 4569836
Alignment:
| Q |
6 |
aagttatccaaacataaaaaagtattgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcac |
96 |
Q |
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|||||| ||||||| ||||||||| ||||||||| ||| ||||| | ||| ||||||||||||| | ||||| || ||||||| ||||| |
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| T |
4569746 |
aagttacccaaacagcaaaaagtatgatgaaaccacgtttgaaaaagcaaacgcgcgtttgaggctgccaaacgtggtaccaaacaagcac |
4569836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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