View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_45 (Length: 226)
Name: NF16832_low_45
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_45 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 32218842 - 32219043
Alignment:
| Q |
25 |
tatatatcacttctttttagttaa-ctcaatggacaaagaatggatgagatttccaagagaaagcccagagtacatgaagggcgtattcttttttcttaa |
123 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32218842 |
tatatatcacttctttttagttaaactcaatggacaaagaatggatgagatttccaagagaaagcccagagtatatgaagggcgtattcttttttcttaa |
32218941 |
T |
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| Q |
124 |
ttatgcctataacaaaggaaaacctgatggactggagcttttcaaactgtctttggcaaagaaaaaccagggaaattgcgctgctattggaagagttaca |
223 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
32218942 |
ttatgcctataacaaaggaaaacctgaaggactggagcttttcaaactgtctttggcaaagaaaaaccagggagattgcgttgcta-tggaagagttaca |
32219040 |
T |
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| Q |
224 |
aca |
226 |
Q |
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||| |
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| T |
32219041 |
aca |
32219043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 24240269 - 24240407
Alignment:
| Q |
28 |
atatcacttcttttt-agttaactcaatggacaaagaatggatgagatttccaagagaaagcccagagtacatgaagggcgtattcttttttcttaatta |
126 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24240269 |
atatcacttcttttttagtaaactcaatggacaaagaatggatgagatttccaagagaaagcccagagtacatgaagggcgtattcttttttcttaatta |
24240368 |
T |
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| Q |
127 |
tgcctataacaaaggaaaacctgatggactggagctttt |
165 |
Q |
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| T |
24240369 |
tgcttataacaaaggaaaacctgaaggactggagatttt |
24240407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 32809842 - 32809704
Alignment:
| Q |
28 |
atatcacttctt-tttagttaactcaatggacaaagaatggatgagatttccaagagaaagcccagagtacatgaagggcgtattcttttttcttaatta |
126 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32809842 |
atatcacttcttatttagtaaactcaatggacaaagaatggatgagatttccaagagaaagcccagagtacatgaagggcgtattcttttttcttaatta |
32809743 |
T |
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| Q |
127 |
tgcctataacaaaggaaaacctgatggactggagctttt |
165 |
Q |
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||| |||||||||||||||||||| ||||||||| |||| |
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| T |
32809742 |
tgcttataacaaaggaaaacctgaaggactggagatttt |
32809704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 24244914 - 24244980
Alignment:
| Q |
159 |
agcttttcaaactgtctttggcaaagaaaaaccagggaaattgcgctgctattggaagagttacaaca |
226 |
Q |
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| T |
24244914 |
agcttttcaaactgtctttggaaaagaaaaaccagggagattgcgctgcta-tggaagagttacaaca |
24244980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 19886913 - 19887051
Alignment:
| Q |
28 |
atatcacttctt-tttagttaactcaatggacaaagaatggatgagatttccaagagaaagcccagagtacatgaagggcgtattcttttttcttaatta |
126 |
Q |
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|||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19886913 |
atatcatttcttatttagtaaactcaatggacaaagaatggatgagatttccaagagaaagcccagagtacatgaagggcgtattcttttttcttaatta |
19887012 |
T |
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| Q |
127 |
tgcctataacaaaggaaaacctgatggactggagctttt |
165 |
Q |
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||| |||||||||||||||||||| ||||||||| |||| |
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| T |
19887013 |
tgcttataacaaaggaaaacctgaaggactggagatttt |
19887051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 19893677 - 19893743
Alignment:
| Q |
159 |
agcttttcaaactgtctttggcaaagaaaaaccagggaaattgcgctgctattggaagagttacaaca |
226 |
Q |
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| T |
19893677 |
agcttttcaaactgtctttggaaaagaaaaaccagggagattgcgctgcta-tggaagagttacaaca |
19893743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 11490479 - 11490413
Alignment:
| Q |
159 |
agcttttcaaactgtctttggcaaagaaaaaccagggaaattgcgctgctattggaagagttacaaca |
226 |
Q |
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| T |
11490479 |
agcttttcaaactgtctttggaaaagaaaaaccagggagattgcgctgcta-tggaagagttacaaca |
11490413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 13778786 - 13778852
Alignment:
| Q |
159 |
agcttttcaaactgtctttggcaaagaaaaaccagggaaattgcgctgctattggaagagttacaaca |
226 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
13778786 |
agcttttcaaactgtctttggaaaagaaaaaccagggagattgcgctgcta-tggaagagttacaaca |
13778852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 8723318 - 8723375
Alignment:
| Q |
38 |
tttttagttaactcaatggacaaagaatggatgagatttccaagagaaagcccagagt |
95 |
Q |
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|||||||| ||||||||||||||||||||||| | ||||||||||||| |||||||| |
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| T |
8723318 |
tttttagtaaactcaatggacaaagaatggataaattttccaagagaaatcccagagt |
8723375 |
T |
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