View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16832_low_8 (Length: 484)
Name: NF16832_low_8
Description: NF16832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16832_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Complemental strand, 37028480 - 37028025
Alignment:
| Q |
11 |
cacagatgccttatatgtggacactatataatagccaattattaattaaactaagttgtttactcaaatacacccttaaaagttacaacacacaagatat |
110 |
Q |
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| T |
37028480 |
cacagatgccgtatatgtggacactatataatagccaattattaattaaactaagttgtttactcaaatacacccttaaaagttacaacacacaagatat |
37028381 |
T |
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| Q |
111 |
aaatcttattttcttaggtaattaaaaccttaagactagcctataaagatgacaaaaccccataaacacattattagtagcacaaaaaagatgcttgcaa |
210 |
Q |
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| T |
37028380 |
aaatcttattttcttaggtaattaaaaccttaagactagcctataaagatgacaaaaccccatacacacattattagtagcacaaaaaagatgcttgcaa |
37028281 |
T |
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| Q |
211 |
cacaagtaaaccaacttcattgttcactaatctagaagttgaccaagagtgatggtgcggaatgtctccattgatggtgattttgacataacaaacatgt |
310 |
Q |
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| T |
37028280 |
cacaagtaaaccaaattcattgttcactaatctagaagttgaccaagagtgatggtgcagaatgtctccattgatggtgattttgacataacaaacatgt |
37028181 |
T |
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| Q |
311 |
tatacgcttgtttcatagttggtcgagaatgtggattcccactcaagcaagcaaatgccatttttgcaatcaagatcacatccttagcaactgaattttc |
410 |
Q |
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| T |
37028180 |
tatacgcttgtttcatagttggtcgagaatgtggattcccactcaagcaagcaaatgccatttttgcaatcaagatcacatccttagcaactgaattttc |
37028081 |
T |
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| Q |
411 |
tggaagtggaagtcttgtgtctaatacatctttcaaaagcaaattatacgccattg |
466 |
Q |
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| T |
37028080 |
tggaagtggaagtcttgtgtctaatacatctttcaaaagcaaattatacgccattg |
37028025 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 31217057 - 31217013
Alignment:
| Q |
342 |
tggattcccactcaagcaagcaaatgccatttttgcaatcaagat |
386 |
Q |
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| T |
31217057 |
tggattctcactcaagcaagaaaatgccaattttgtaatcaagat |
31217013 |
T |
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