View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16833_high_1 (Length: 387)
Name: NF16833_high_1
Description: NF16833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16833_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 244096 - 244458
Alignment:
| Q |
19 |
cataggaggaggacacaagagtaaatcatattcatcatcagtgactccaacaacaagaaggagcaaatcatggcctggtcttccacggggcgaagaaaat |
118 |
Q |
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| T |
244096 |
cataggaggaggacacaagagtaaatcatattcatcatcagtgactccaacaacaagaaggagcaaatcatggcctggtcttccacggggcgaagaaaat |
244195 |
T |
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| Q |
119 |
agacgaaagaaagtggccccggagggatgcttttcggtgtacgttggacctcaaatgcaaaggtttgtgatcaaaactgagtatgctaatcatcctttgt |
218 |
Q |
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| T |
244196 |
agacgaaagaaagtggccccggagggatgcttttcggtgtacgttggacctcaaatgcaaaggtttgtgatcaaaactgagtatgctaatcatcctttgt |
244295 |
T |
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| Q |
219 |
tcaagatgttgcttgaagaagctgaatcagaatatggttatagctgccaaggacctttggctcttccttgtaatgttgatgtcttttacaaagtgttgat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244296 |
tcaagatgttgcttgaagaagctgaatcagaatatggttatagctgccaaggacctttggctcttccttgtaatgttgatgtcttttacaaagtgttgat |
244395 |
T |
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| Q |
319 |
ggaaatggataatgaagctcctctccaaggttgtacttttggtcgttctcgttcttcttatca |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244396 |
ggaaatggataatgaagctcctctccaaggttgtacttttggtcgttctcgttcttcttatca |
244458 |
T |
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