View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16833_low_2 (Length: 387)
Name: NF16833_low_2
Description: NF16833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16833_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 6101100 - 6101491
Alignment:
| Q |
1 |
ttgttttatggaggatgaggacaagatatggcgtcgttttcgaacaaaacggagatcgtgattgttcactgttgagacatatgaatgaacagaatcagat |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6101100 |
ttgttttatggaggatgaggacaagatatagcgtcgttttcgaacaaaacggagatcgtgattgttcactgttgagacatatgaatgaacagaatcagat |
6101199 |
T |
|
| Q |
101 |
gaannnnnnnnnnnnn----aggtgaatctctgtctttgagtctgatcagtgtgtgaagcttttattgtagttgagttatgggtcaaacacaaacttaca |
196 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6101200 |
gaaagagagagagagagagaaggtgaatctctgtctttgagtctgatcagtttgtgaagcttttattgtagttgagttatgggtcaaacacaaacttaca |
6101299 |
T |
|
| Q |
197 |
aattactaagaccagtcatatattgtacgtatatactgctttaactgcctctaacattattcattcata------------------tgctatttctata |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6101300 |
aattactaagaccagtcatatattgtacgtatatactgctttaactgcctctaacattattcattcatatgctattgctattgctattgctatttctata |
6101399 |
T |
|
| Q |
279 |
gtatattcacgaccctcacaactttcgtccctccccgttaactttgatgcattcttatctcatcatgtatattcttattatataaaatcaac |
370 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6101400 |
gtatattcacgacccccacaactttcgtccctccccgttaactttgatgcattcttatctcatcatgtatattcttattatataaaatcaac |
6101491 |
T |
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