View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16833_low_4 (Length: 207)
Name: NF16833_low_4
Description: NF16833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16833_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 1188830 - 1188962
Alignment:
| Q |
10 |
gagcacagaatggaaaaccacaaaccattgatattacaaaccaaggttcaagatttcgagctattgttcaaaacacaatatcttattttgataattcagg |
109 |
Q |
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| T |
1188830 |
gagcacagaatggaaaaccacaaaccattgatattacaaaccaaggttcaagatttctagctattgttcaaaacacaatatcttattttgataattcagg |
1188929 |
T |
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| Q |
110 |
ctcaattgaaagatcatcagactaaccaaaaaa |
142 |
Q |
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| T |
1188930 |
ctcaattgaaagatcatcagactaaccaaaaaa |
1188962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 1194400 - 1194471
Alignment:
| Q |
16 |
agaatggaaaaccacaaaccattgatattacaaaccaaggttcaagatttcgagctattgttcaaaacacaa |
87 |
Q |
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| T |
1194400 |
agaatggaataccacaaactattgatattacaaactaaggtccaagatttctagctattgttctaaacacaa |
1194471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 1183692 - 1183732
Alignment:
| Q |
16 |
agaatggaaaaccacaaaccattgatattacaaaccaaggt |
56 |
Q |
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| T |
1183692 |
agaaaggaaaaccacaaactattgatattacaaactaaggt |
1183732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 5510537 - 5510464
Alignment:
| Q |
14 |
acagaatggaaaaccacaaaccattgatattacaaaccaaggttcaagatttcgagctattgttcaaaacacaa |
87 |
Q |
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| T |
5510537 |
acagaaaggaaaaccacaatttagtgatattacaaaccaaggtccaggatttctagatattattcaaaacacaa |
5510464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 10204165 - 10204195
Alignment:
| Q |
36 |
attgatattacaaaccaaggttcaagatttc |
66 |
Q |
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| T |
10204165 |
attgatattacaaaccaaggttcaagatttc |
10204195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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