View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16834_low_3 (Length: 246)
Name: NF16834_low_3
Description: NF16834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16834_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 33768450 - 33768220
Alignment:
| Q |
1 |
ttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgatgttaaatgtaaacactaagtaattatttctgtactgtcttg |
100 |
Q |
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| T |
33768450 |
ttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgatgttgaatgtaaacactaagtaattatttatgtactgtcttg |
33768351 |
T |
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| Q |
101 |
tgacttttaatttaatagagattacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgtttaccaccgagttttatccaagcat |
200 |
Q |
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| T |
33768350 |
tgacttttaatttaatagagattacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgtttaccaccgagttttatccaagcat |
33768251 |
T |
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| Q |
201 |
ataggccctagagtttccatagctagcttct |
231 |
Q |
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| T |
33768250 |
ataggccctagagtttccatagctagcttct |
33768220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 33761739 - 33761631
Alignment:
| Q |
123 |
tacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgtttaccaccgagttttatccaagcatataggccctagagtttccatag |
222 |
Q |
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| T |
33761739 |
tacatttatcattctcctttgcagcttataacaaatgacatgttcacaagtgtttatcaccgggttttatccaaaaatattggccctagaatttccatag |
33761640 |
T |
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| Q |
223 |
ctagcttct |
231 |
Q |
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| T |
33761639 |
caagcttct |
33761631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 33771141 - 33771030
Alignment:
| Q |
120 |
gattacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgtttaccaccgagttttatccaagcatataggccctagagtttcca |
219 |
Q |
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| T |
33771141 |
gattacatatatcaatcttgtttgcagcttgtaacaaatgacatgttcacaagtgtttatcatcgggttctatccaagaatataggacctagaatttcta |
33771042 |
T |
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| Q |
220 |
tagctagcttct |
231 |
Q |
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| T |
33771041 |
tcgcaagcttct |
33771030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33761856 - 33761782
Alignment:
| Q |
1 |
ttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgatgttaaatgtaaacact |
75 |
Q |
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||||||| || |||||||||||||| |||||| | || |||||| ||||||||||||||| |||||||||||||| |
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| T |
33761856 |
ttcctccactgcatggatctcttgttgtaaacgttggtgatcttatgcaggtaagtgatggtaaatgtaaacact |
33761782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 33771278 - 33771222
Alignment:
| Q |
12 |
catggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgatgttaaatgt |
68 |
Q |
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|||||||||||| ||||||| || || |||||||||||||||| | || |||||||| |
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| T |
33771278 |
catggatctcttatagtaaatattggtgatcttctgcaggtaactaattttaaatgt |
33771222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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