View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16835_high_2 (Length: 489)
Name: NF16835_high_2
Description: NF16835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16835_high_2 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Complemental strand, 44635807 - 44635337
Alignment:
| Q |
16 |
atgcaacactagagatcgaaagtgatgaatttgattactcaaaaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaac |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44635807 |
atgcaacactagagatcgaaagcgatgaatttgattactcaaaaagatcacaatggctacgtgccgcagttttaggagctaatgatggattagtttcaac |
44635708 |
T |
|
| Q |
116 |
agcatcactaatgatgggtgtaggagcagtgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44635707 |
agcatcactaatgatgggtgtaggagcagtgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggca |
44635608 |
T |
|
| Q |
216 |
ataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaa---------------agaggtaataatattgaagagaaagaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44635607 |
ataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagagacaatattgaaagaggtaataatattgaagagaaagaaa |
44635508 |
T |
|
| Q |
301 |
gtttgccaaatcctttacaagcagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttcattaaagattataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44635507 |
gtttgccaaatcctttacaagcagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttcattaaagattataa |
44635408 |
T |
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| Q |
401 |
ggtaagggtaggtgttgttttgggagcagttagttttgctttggttgtgtttggttggttgggtgcagtgt |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44635407 |
ggtaagggtaggtgttgttttgggagcagttagttttgctttggttgtgtttggttggttgggtgcagtgt |
44635337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 45 - 276
Target Start/End: Original strand, 12281527 - 12281758
Alignment:
| Q |
45 |
tttgattactcaaaaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcag |
144 |
Q |
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||||| |||||||||||||||||||||||| | || || |||||||| ||||| ||||||||||| || ||||| || |||||||||||||| || |||| |
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| T |
12281527 |
tttgactactcaaaaagatcacaatggctaagagcagctgttttaggcgctaacgatggattagtctctacagcttcgctaatgatgggtgtcggtgcag |
12281626 |
T |
|
| Q |
145 |
tgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcaca |
244 |
Q |
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| || |||||||| ||||| |||||||| | |||||||| || | ||||| |||||||| ||||||||||||||||| ||||| ||||| || ||||| |
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| T |
12281627 |
tcaagcaagacatcaaagcaatgatcttaaccggttttgccgggttggtagccggtgcatgcagcatggcaataggtgaatttgtctctgtgtactcaca |
12281726 |
T |
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| Q |
245 |
acttgacattgaaattgctcaattaaaaagag |
276 |
Q |
| |
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| | ||||||||| |||||||| | ||||||| |
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| T |
12281727 |
attagacattgaagttgctcaaatgaaaagag |
12281758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 287 - 460
Target Start/End: Original strand, 12281790 - 12281963
Alignment:
| Q |
287 |
tgaagagaaagaaagtttgccaaatcctttacaagcagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttc |
386 |
Q |
| |
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|||||||||||||||||| || |||||| ||||||| ||||| || ||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| |
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| T |
12281790 |
tgaagagaaagaaagtttacctaatcctctacaagctgcagctgcatcagctttagctttttctattggtgcaatggtgccattacttgcagcttttttt |
12281889 |
T |
|
| Q |
387 |
attaaagattataaggtaagggtaggtgttgttttgggagcagttagttttgctttggttgtgtttggttggtt |
460 |
Q |
| |
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|| | ||||||||||| || || ||||||||| | | |||||||||||||||||| |||| ||||||||||| |
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| T |
12281890 |
ataagggattataaggtgagagttggtgttgttgtagctgcagttagttttgctttgcttgtttttggttggtt |
12281963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 275
Target Start/End: Complemental strand, 13673 - 13456
Alignment:
| Q |
58 |
aaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
157 |
Q |
| |
|
||||| |||||||||| | || || |||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| || || || | | |||| | |
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| T |
13673 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
13574 |
T |
|
| Q |
158 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaa |
257 |
Q |
| |
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|| | ||||| | | || ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |
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| T |
13573 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaa |
13474 |
T |
|
| Q |
258 |
attgctcaattaaaaaga |
275 |
Q |
| |
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|||| ||| | |||||| |
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| T |
13473 |
tttgcacaaatgaaaaga |
13456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 275
Target Start/End: Complemental strand, 19353 - 19136
Alignment:
| Q |
58 |
aaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
157 |
Q |
| |
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||||| |||||||||| | || || |||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| || || || | | |||| | |
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| T |
19353 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
19254 |
T |
|
| Q |
158 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaa |
257 |
Q |
| |
|
|| | ||||| | | || ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |
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| T |
19253 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaa |
19154 |
T |
|
| Q |
258 |
attgctcaattaaaaaga |
275 |
Q |
| |
|
|||| ||| | |||||| |
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| T |
19153 |
tttgcacaaatgaaaaga |
19136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 275
Target Start/End: Original strand, 1292921 - 1293138
Alignment:
| Q |
58 |
aaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
157 |
Q |
| |
|
||||| |||||||||| | || || |||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| || || || | | |||| | |
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| T |
1292921 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
1293020 |
T |
|
| Q |
158 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaa |
257 |
Q |
| |
|
|| | ||||| | | || ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| |||||| |
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| T |
1293021 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaa |
1293120 |
T |
|
| Q |
258 |
attgctcaattaaaaaga |
275 |
Q |
| |
|
|||| ||| | |||||| |
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|
| T |
1293121 |
tttgcacaaatgaaaaga |
1293138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 37742354 - 37742438
Alignment:
| Q |
192 |
gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag |
276 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| || ||||| ||||||||| |
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|
| T |
37742354 |
gtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag |
37742438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 37749424 - 37749508
Alignment:
| Q |
192 |
gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag |
276 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| || ||||| ||||||||| |
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|
| T |
37749424 |
gtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag |
37749508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 37752364 - 37752280
Alignment:
| Q |
192 |
gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag |
276 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| || ||||| ||||||||| |
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|
| T |
37752364 |
gtagcaggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag |
37752280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 37758230 - 37758154
Alignment:
| Q |
66 |
caatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagc |
142 |
Q |
| |
|
|||||||| || || || || |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
37758230 |
caatggcttcgcgcagccgtattaggagctaatgatggattagtttctgttgcttcactaatgatgggtgtaggagc |
37758154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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