View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16835_high_7 (Length: 290)

Name: NF16835_high_7
Description: NF16835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16835_high_7
NF16835_high_7
[»] chr1 (12 HSPs)
chr1 (1-209)||(25880958-25881171)
chr1 (30-209)||(28314956-28315133)
chr1 (98-144)||(14273161-14273207)
chr1 (98-144)||(14284567-14284613)
chr1 (98-144)||(3474219-3474265)
chr1 (8-144)||(35755677-35755813)
chr1 (8-55)||(23550717-23550764)
chr1 (98-144)||(21632647-21632693)
chr1 (107-199)||(16768984-16769074)
chr1 (101-144)||(23550621-23550664)
chr1 (93-145)||(26907521-26907574)
chr1 (167-199)||(15811275-15811307)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-209)||(23552-23765)
[»] chr3 (18 HSPs)
chr3 (2-209)||(54623271-54623477)
chr3 (1-209)||(32876771-32876978)
chr3 (1-153)||(17531097-17531249)
chr3 (1-153)||(17536036-17536188)
chr3 (4-144)||(36433691-36433831)
chr3 (98-144)||(46306720-46306766)
chr3 (97-142)||(13953238-13953283)
chr3 (95-192)||(48977773-48977867)
chr3 (95-192)||(48987313-48987407)
chr3 (98-144)||(5384693-5384739)
chr3 (8-144)||(46279958-46280094)
chr3 (8-55)||(37919857-37919904)
chr3 (164-199)||(24814585-24814620)
chr3 (164-199)||(28352695-28352730)
chr3 (164-199)||(28368627-28368662)
chr3 (164-199)||(28376445-28376480)
chr3 (164-199)||(28384267-28384302)
chr3 (98-144)||(37919768-37919814)
[»] scaffold0021 (1 HSPs)
scaffold0021 (4-209)||(176409-176613)
[»] chr4 (21 HSPs)
chr4 (1-209)||(16490884-16491092)
chr4 (4-209)||(17239015-17239219)
chr4 (4-214)||(23443686-23443897)
chr4 (98-144)||(20885595-20885641)
chr4 (98-144)||(33309958-33310004)
chr4 (98-145)||(50518178-50518225)
chr4 (98-144)||(15551555-15551601)
chr4 (100-199)||(15843825-15843923)
chr4 (8-144)||(28069923-28070059)
chr4 (100-199)||(26811689-26811785)
chr4 (100-199)||(26821156-26821252)
chr4 (100-199)||(3243197-3243295)
chr4 (164-201)||(23621969-23622006)
chr4 (8-144)||(25515184-25515320)
chr4 (164-199)||(3917245-3917280)
chr4 (164-199)||(54690888-54690923)
chr4 (164-199)||(54700319-54700354)
chr4 (8-49)||(25538348-25538389)
chr4 (95-144)||(25538471-25538520)
chr4 (99-144)||(50065828-50065873)
chr4 (164-199)||(39128670-39128705)
[»] scaffold0101 (1 HSPs)
scaffold0101 (98-209)||(43021-43131)
[»] chr5 (23 HSPs)
chr5 (98-199)||(33956643-33956742)
chr5 (98-199)||(20034933-20035033)
chr5 (95-210)||(17554772-17554885)
chr5 (98-144)||(20833428-20833474)
chr5 (99-199)||(24279240-24279339)
chr5 (99-199)||(24382875-24382974)
chr5 (95-192)||(31151628-31151722)
chr5 (95-209)||(1694747-1694859)
chr5 (95-152)||(5599715-5599773)
chr5 (95-152)||(5609361-5609419)
chr5 (100-199)||(22158504-22158601)
chr5 (100-199)||(22488351-22488449)
chr5 (164-199)||(4635125-4635160)
chr5 (100-151)||(13816509-13816559)
chr5 (164-199)||(18568216-18568251)
chr5 (164-199)||(24412007-24412042)
chr5 (164-199)||(24421467-24421502)
chr5 (164-199)||(30445803-30445838)
chr5 (164-199)||(30455175-30455210)
chr5 (164-199)||(30460233-30460268)
chr5 (8-55)||(2641466-2641513)
chr5 (164-199)||(22129416-22129451)
chr5 (95-143)||(24245178-24245225)
[»] chr2 (8 HSPs)
chr2 (98-199)||(3394688-3394787)
chr2 (95-192)||(1790102-1790196)
chr2 (95-192)||(1799596-1799690)
chr2 (95-196)||(27421450-27421550)
chr2 (105-192)||(22631352-22631435)
chr2 (100-199)||(31711380-31711478)
chr2 (98-144)||(3395893-3395939)
chr2 (100-202)||(24023667-24023767)
[»] chr8 (16 HSPs)
chr8 (8-144)||(988167-988303)
chr8 (98-141)||(12924352-12924395)
chr8 (8-55)||(7807617-7807664)
chr8 (100-151)||(18144564-18144614)
chr8 (164-199)||(20709840-20709875)
chr8 (95-150)||(25052181-25052235)
chr8 (100-199)||(7789988-7790084)
chr8 (8-46)||(7837050-7837088)
chr8 (95-144)||(7836952-7837001)
chr8 (100-145)||(24268869-24268914)
chr8 (100-151)||(18884288-18884338)
chr8 (100-151)||(25038148-25038198)
chr8 (95-144)||(7807529-7807577)
chr8 (95-143)||(18241383-18241430)
chr8 (95-143)||(18250834-18250881)
chr8 (100-144)||(42897095-42897138)
[»] scaffold0281 (1 HSPs)
scaffold0281 (95-210)||(23139-23252)
[»] scaffold0920 (1 HSPs)
scaffold0920 (98-144)||(1816-1862)
[»] chr7 (10 HSPs)
chr7 (98-144)||(14635886-14635932)
chr7 (98-144)||(14645586-14645632)
chr7 (98-144)||(15948518-15948564)
chr7 (98-144)||(33293308-33293354)
chr7 (100-199)||(4119342-4119440)
chr7 (100-199)||(7590199-7590297)
chr7 (100-199)||(7592180-7592278)
chr7 (105-210)||(14774688-14774790)
chr7 (105-210)||(15225141-15225243)
chr7 (164-209)||(2206860-2206905)
[»] chr6 (9 HSPs)
chr6 (98-144)||(22064607-22064653)
chr6 (98-144)||(22065300-22065346)
chr6 (98-144)||(23883500-23883546)
chr6 (100-199)||(23896521-23896619)
chr6 (97-144)||(19599096-19599141)
chr6 (100-151)||(23117842-23117894)
chr6 (164-199)||(18419731-18419766)
chr6 (100-145)||(19024920-19024966)
chr6 (118-151)||(25912120-25912153)
[»] scaffold0771 (1 HSPs)
scaffold0771 (97-142)||(5378-5423)
[»] scaffold0773 (1 HSPs)
scaffold0773 (98-144)||(1896-1942)
[»] scaffold0040 (2 HSPs)
scaffold0040 (100-199)||(31725-31823)
scaffold0040 (102-212)||(9187-9295)
[»] scaffold0001 (1 HSPs)
scaffold0001 (100-199)||(412478-412576)
[»] scaffold1409 (1 HSPs)
scaffold1409 (98-144)||(339-385)
[»] scaffold0233 (1 HSPs)
scaffold0233 (100-199)||(27031-27129)
[»] scaffold0028 (2 HSPs)
scaffold0028 (164-199)||(95406-95441)
scaffold0028 (164-199)||(104847-104882)
[»] scaffold0482 (2 HSPs)
scaffold0482 (100-199)||(1829-1925)
scaffold0482 (163-199)||(2715-2751)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 25881171 - 25880958
Alignment:
Q  1 gttccaaaaagtccatttatgtccttttgcttatttgctttgataaggacctttttt-----aacttgtcttgtgagcaaagaaccttcttcttatgtta 95  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  25881171 gttccaaaaagtccatttatgtccttttgcttatttcctttgataaggacctttttttttttaacttgtcttgtgagcaaagaaccttcttcttatgtta 25881072  T
Q  96 agaacattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataagga 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25881071 agaacattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataagga 25880972  T
Q  196 ttttttcctcaaca 209  Q
    ||||||||||||||    
T  25880971 ttttttcctcaaca 25880958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 28314956 - 28315133
Alignment:
Q  30 cttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttcttatgttaagaacattctcatgaaacatttctcacaaaattc 129  Q
    ||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28314956 cttatttgctttgatgaggacgtttt-taacttgtcctgtgagcaaagaaccttcttcttatgttaagaacattctcatgaaacatttctcacaaaattc 28315054  T
Q  130 attagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattttttcctcaaca 209  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| ||||| || ||||||    
T  28315055 attaatagataacaagttaaaaaacaaatattaaatgtttgtaatctttaaaa-ttcaaataagaattttgtcttcaaca 28315133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 14273161 - 14273207
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14273161 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 14273207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 14284567 - 14284613
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14284567 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 14284613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 3474219 - 3474265
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  3474219 aacattctcatgaaacatttctcacaaaattcatttgtagataacaa 3474265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 35755677 - 35755813
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttct-tatgttaagaacattctc 106  Q
    ||||| |||||||||||||||||||||||| ||||||||||| | |||| |||||  ||||| | |  ||||  ||||||| | |   ||||||||||||    
T  35755677 aaagttcatttatgtccttttgcttatttgttttgataagga-cgttttcaacttcacttgtaatcttagaatgttcttctctttaacaagaacattctc 35755775  T
Q  107 atgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||  || | |||||||||||    
T  35755776 atgaaacatttctcacaaaacacactcgtagataacaa 35755813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 23550764 - 23550717
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataaggacctttt 55  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  23550764 aaagttcatttatgtccttttgcttatttgctttgataaggacgtttt 23550717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 21632693 - 21632647
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||    
T  21632693 aacattctcatgaaacatttctcacaaaataaattagtagataacaa 21632647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 16768984 - 16769074
Alignment:
Q  107 atgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||  |||||||||||||||||  | |||| |||| ||| |||| ||||||| |||| ||||||| | ||||||||    
T  16768984 atgaaacatttctcacaaaacacattagtagataacaag--ataaaataatttttatatgtgtgtaatccttaacacatcaattgaggatttt 16769074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 23550664 - 23550621
Alignment:
Q  101 attctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||||||||  || |||||||||||||    
T  23550664 attctcatgaaacatttctcacaaaacacactagtagataacaa 23550621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 26907521 - 26907574
Alignment:
Q  93 ttaagaacattctcatgaaacatttctcac-aaaattcattagtagataacaag 145  Q
    |||||| ||||||  ||||||||||||||| |||| ||||||||||||||||||    
T  26907521 ttaagatcattcttgtgaaacatttctcacaaaaaatcattagtagataacaag 26907574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 15811275 - 15811307
Alignment:
Q  167 tttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||| |||||||||||||    
T  15811275 tttgtaatctttaaaacataaaataaggatttt 15811307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 23765 - 23552
Alignment:
Q  1 gttccaaaaagtccatttatgtccttttgcttatttgctttgataaggacctttttt-----aacttgtcttgtgagcaaagaaccttcttcttatgtta 95  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  23765 gttccaaaaagtccatttatgtccttttgcttatttcctttgataaggacctttttttttttaacttgtcttgtgagcaaagaaccttcttcttatgtta 23666  T
Q  96 agaacattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataagga 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23665 agaacattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattaataaatgtttgtaatctttaaaacatcaaataagga 23566  T
Q  196 ttttttcctcaaca 209  Q
    ||||||||||||||    
T  23565 ttttttcctcaaca 23552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 54623477 - 54623271
Alignment:
Q  2 ttccaaaaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttcttatgttaagaaca 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  54623477 ttccaaaaagtccatttatgtccttttgcttattttctttgataaggacgttttt-aacttgttttgtgagcaaagaaccttcttcttgtgttaagaaca 54623379  T
Q  102 ttctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggatttttt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54623378 ttctcatgaaacatttctcacaaaattcattagtagataacaaattaaaaaacaattattaaatatttgtaatctttaaaacatcaaataaggatttttt 54623279  T
Q  202 cctcaaca 209  Q
    ||||||||    
T  54623278 cctcaaca 54623271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 32876978 - 32876771
Alignment:
Q  1 gttccaaaaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttcttatgttaagaac 100  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  32876978 gttccaacaaatccatttatgtcattttgcttatttgctttgataaggacgttttt-aacttgtcttgtgaacaaagaacattcttcttatgttaagaac 32876880  T
Q  101 attctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||     
T  32876879 attctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacattgaataaggattttg 32876780  T
Q  201 tcctcaaca 209  Q
    |||||||||    
T  32876779 tcctcaaca 32876771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 17531097 - 17531249
Alignment:
Q  1 gttccaaaaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttcttatgttaagaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17531097 gttccaaaaagtccatttatgtccttttgcttatttgctttgataaagacttttttcaacttgtcttgtgagcaaagaaccttcttcttatgttaagaac 17531196  T
Q  101 attctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17531197 attctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaa 17531249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 17536036 - 17536188
Alignment:
Q  1 gttccaaaaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttcttatgttaagaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17536036 gttccaaaaagtccatttatgtccttttgcttatttgctttgataaagacttttttcaacttgtcttgtgagcaaagaaccttcttcttatgttaagaac 17536135  T
Q  101 attctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaa 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17536136 attctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaa 17536188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 36433691 - 36433831
Alignment:
Q  4 ccaaaaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttct-tatgttaagaacat 102  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||  ||||| | |  ||||  ||||||| | |   ||||||||    
T  36433691 ccaaaaagttcatttatgtccttttgcttatttgctttgataagga-cgttttcaacttcacttgtaatcttagaatgttcttctctttaacaagaacat 36433789  T
Q  103 tctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||||||  || | |||||||||||    
T  36433790 tctcatgaaacatttctcacaaaacacacttgtagataacaa 36433831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 46306720 - 46306766
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46306720 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 46306766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 13953238 - 13953283
Alignment:
Q  97 gaacattctcatgaaacatttctcacaaaattcattagtagataac 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13953238 gaacattctcatgaaacatttctcacaaaattcattagtagataac 13953283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 48977867 - 48977773
Alignment:
Q  95 aagaacattct-catgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataa 192  Q
    ||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||| |    ||  ||||||||| ||||||||||||||||||||    
T  48977867 aagaacattcttcatgaaacatttctcacaaaacatattagtagataacaagttaaaaacc----atagaatgtttgtgatctttaaaacatcaaataa 48977773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 48987407 - 48987313
Alignment:
Q  95 aagaacattct-catgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataa 192  Q
    ||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||| |    ||  ||||||||| ||||||||||||||||||||    
T  48987407 aagaacattcttcatgaaacatttctcacaaaacatattagtagataacaagttaaaaacc----atagaatgtttgtgatctttaaaacatcaaataa 48987313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 5384739 - 5384693
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  5384739 aacattcttatgaaacatttctcacaaaattcattagtagataacaa 5384693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 46279958 - 46280094
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttcttatgtt-aagaacattctc 106  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||||  |||||  ||||| | |  ||||  |||||||  |    ||||||||||||    
T  46279958 aaagttcatttatgtccttttgcttatttgatttgataaggacgttttc-aacttcacttgtaatcttagaatgttcttctccttaacaagaacattctc 46280056  T
Q  107 atgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||  || |||||||||||||    
T  46280057 atgaaacatttctcacaaaacacactagtagataacaa 46280094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 37919904 - 37919857
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataaggacctttt 55  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  37919904 aaagttcatttatgtccttttgcttatttgctttgataaggacgtttt 37919857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 24814585 - 24814620
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  24814585 atgtttgtaatctttaaaacatcaaataaggatttt 24814620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 28352695 - 28352730
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  28352695 atgtttgtaatctttaaaacatcaaataaggatttt 28352730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 28368627 - 28368662
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  28368627 atgtttgtaatctttaaaacatcaaataaggatttt 28368662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 28376445 - 28376480
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  28376445 atgtttgtaatctttaaaacatcaaataaggatttt 28376480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 28384267 - 28384302
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  28384267 atgtttgtaatctttaaaacatcaaataaggatttt 28384302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 37919814 - 37919768
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||  || || ||||||||||    
T  37919814 aacattctcatgaaacatttctcacaaaacacactaatagataacaa 37919768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 176613 - 176409
Alignment:
Q  4 ccaaaaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttcttatgttaagaacatt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  176613 ccaaaaagtccatttatgtccttttgcttatttgctttgataaggacgttttt-aacttgtcttgtgagcaaaaaaccttcttcttatgttaagaacatt 176515  T
Q  104 ctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattttttcc 203  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  176514 ctcatgaaacatttctcacaaaacatattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatctaataaggattttgtcc 176415  T
Q  204 tcaaca 209  Q
    ||||||    
T  176414 tcaaca 176409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 16490884 - 16491092
Alignment:
Q  1 gttccaaaaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttcttatgttaagaac 100  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||  ||||||||||||||||||||| ||||||||||    
T  16490884 gttccaaaaagcccatttatgtccttttacttatttgctttgataatgacgtttt-taacttgtctattgagcaaagaaccttcttcttttgttaagaac 16490982  T
Q  101 attctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaa-acaattattaaatgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  16490983 attctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaagacaattattaaatgtttataatctgtaaaacatcaaataaggatttt 16491082  T
Q  200 ttcctcaaca 209  Q
     |||||||||    
T  16491083 gtcctcaaca 16491092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 4 - 209
Target Start/End: Complemental strand, 17239219 - 17239015
Alignment:
Q  4 ccaaaaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttcttatgttaagaacatt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||| |||    
T  17239219 ccaaaaagtccatttatgtccttttgcttatttgctttgataaggacgttttc-aatttgtcttgtgagcaaagaaccttcttcttatgttaagaatatt 17239121  T
Q  104 ctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattttttcc 203  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||| |||    
T  17239120 ctcatgaaacatttctcacaaaattcaaaagtagataacaagttaaaaaacaagtataaaatgtttgtaatctttacaacatcaaatcaggattttgtcc 17239021  T
Q  204 tcaaca 209  Q
    ||||||    
T  17239020 tcaaca 17239015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 23443686 - 23443897
Alignment:
Q  4 ccaaaaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttctt-cttatgttaagaacat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| ||||| ||||||||||||||||    
T  23443686 ccaaaaagtccatttatgtccttttgcttatttgctttgataaggacgttttt-aacttgtcttttgagcaaagaactttctttcttatgttaagaacat 23443784  T
Q  103 tctcatgaaacatttctcacaaaattcattagtagataacaagtt-aaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggatttttt 201  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  23443785 tctcatgaaacatttctcacaaaattcatcagtagataataagttaaaaaaacaagtattaaatgtttgtaatctttaaaacatcaaataaggattttgt 23443884  T
Q  202 cctcaacactttt 214  Q
    | |||||| ||||    
T  23443885 catcaacagtttt 23443897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 20885595 - 20885641
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20885595 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 20885641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 33309958 - 33310004
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33309958 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 33310004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 50518178 - 50518225
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaag 145  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  50518178 aacattctcatgaaacatttctcacaaaatacattagtagataacaag 50518225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 15551555 - 15551601
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  15551555 aacattctcatgaaacatttctcacaaaattcgttagtagataacaa 15551601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 15843825 - 15843923
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  ||| | |||||||||||||||||||||||||||||||||||    
T  15843825 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaaacatcaaataaggattt 15843922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 28070059 - 28069923
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttct-tatgttaagaacattctc 106  Q
    ||||| |||||||||| |||||||||||||||||||||| ||| ||||  |||||  ||||| | |  ||||  ||||||| | |   ||||||||||||    
T  28070059 aaagttcatttatgtcattttgcttatttgctttgataaagacgttttc-aacttcacttgtaatcttagaatgttcttctctttaacaagaacattctc 28069961  T
Q  107 atgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||  || |||||||||||||    
T  28069960 atgaaacatttctcacaaaacacactagtagataacaa 28069923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 26811785 - 26811689
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  |||  ||||||||||||||||||||||||||||||||||||    
T  26811785 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tat--aatgtttgtaatctttaaaacatcaaataaggattt 26811690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 26821252 - 26821156
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  |||  ||||||||||||||||||||||||||||||||||||    
T  26821252 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tat--aatgtttgtaatctttaaaacatcaaataaggattt 26821157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 3243197 - 3243295
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||| ||||||||| | ||| | |  ||| | |||||||||||||||||||||||||||||||||||    
T  3243197 cattctcatgaaacaaattctcacaaaacgaattagtggataacaagattaaataaa--tataatatgtttgtaatctttaaaacatcaaataaggattt 3243294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 23622006 - 23621969
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttttt 201  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23622006 atgtttgtaatctttaaaacatcaaataaggatttttt 23621969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 25515320 - 25515184
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttct-tatgttaagaacattctc 106  Q
    ||||| ||| ||||||||||||||||||||||||||||||||  ||||  |||||  ||||| | |  ||||  ||||||| | |   || |||||||||    
T  25515320 aaagttcatctatgtccttttgcttatttgctttgataaggatgttttc-aacttcacttgtaatcttagaatgttcttctctttaacaataacattctc 25515222  T
Q  107 atgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||  || |||||||||||||    
T  25515221 atgaaacatttctcacaaaacacactagtagataacaa 25515184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 3917280 - 3917245
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  3917280 atgtttgtaatctttaaaacatcaaataaggatttt 3917245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 54690888 - 54690923
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  54690888 atgtttgtaatctttaaaacatcaaataaggatttt 54690923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 54700319 - 54700354
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  54700319 atgtttgtaatctttaaaacatcaaataaggatttt 54700354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 25538348 - 25538389
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataagga 49  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  25538348 aaagttcatttatgtccttttgcttattttctttgataagga 25538389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 25538471 - 25538520
Alignment:
Q  95 aagaacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||||| ||||||||  || |||||||||||||    
T  25538471 aagaacattctcatgaaacatttatcacaaaacacactagtagataacaa 25538520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 50065828 - 50065873
Alignment:
Q  99 acattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||||||||||  || |||||||||||||    
T  50065828 acattctcatgaaacatttctcacaaaacacactagtagataacaa 50065873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 39128670 - 39128705
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    |||||||||||||||||||||| |||||||||||||    
T  39128670 atgtttgtaatctttaaaacattaaataaggatttt 39128705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 43021 - 43131
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggatt 197  Q
    |||||| | ||||||||| ||| ||||||| |||||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||||||||  |||    
T  43021 aacatttttatgaaacatatcttacaaaatacattagtagataacaagt-aaaaaacaagtatagaatgtttgtaatctttaaaacatcaaataaaaatt 43119  T
Q  198 ttttcctcaaca 209  Q
    || |||||||||    
T  43120 ttgtcctcaaca 43131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 33956643 - 33956742
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggatt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||  | ||| |  | |||||||| ||||||||||||||||  |||||||    
T  33956643 aacattctcatgaaacatttctcacaaaattcattagtagataacaatataaattaaaataa--atatgtttgttatctttaaaacatcaataaaggatt 33956740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 20035033 - 20034933
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggatt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||| | || ||  | |||||||| ||||||||||||| ||  |||||||    
T  20035033 aacattctcatgaaacatttctcacaaaattcattagtagataacaatataaaataaaagta-aatatgtttgttatctttaaaacattaataaaggatt 20034935  T
Q  198 tt 199  Q
    ||    
T  20034934 tt 20034933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 17554772 - 17554885
Alignment:
Q  95 aagaacattct-catgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaat-aa 192  Q
    ||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||     |||  ||||||||| |||||||||||||||||| ||    
T  17554772 aagaacattcttcatgaaacatttctcacaaaacatattagtagataacaagttaaaaac----tatagaatgtttgtgatctttaaaacatcaaataaa 17554867  T
Q  193 ggattttttcctcaacac 210  Q
    ||||||| | ||||||||    
T  17554868 ggattttgttctcaacac 17554885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 20833474 - 20833428
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20833474 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 20833428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 24279240 - 24279339
Alignment:
Q  99 acattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggatt 197  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||||| | ||| | |  ||| | ||||||||||||||||||||||||||||||||||    
T  24279240 acattctcatgaaacaaattctcacaaaatgaattagtagataacaagattaaataaa--tataacatgtttgtaatctttaaaacatcaaataaggatt 24279337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 24382974 - 24382875
Alignment:
Q  99 acattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggatt 197  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||||| | ||| | |  ||| | ||||||||||||||||||||||||||||||||||    
T  24382974 acattctcatgaaacaaattctcacaaaatgaattagtagataacaagattaaataaa--tataacatgtttgtaatctttaaaacatcaaataaggatt 24382877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 31151628 - 31151722
Alignment:
Q  95 aagaacattct-catgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataa 192  Q
    ||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||| |    ||  ||||||||| ||||||||||||||||||||    
T  31151628 aagaacattcttcatgaaacatttctcacaaaacatattagtagataacaagttaaaaacc----atagaatgtttgtgatctttaaaacatcaaataa 31151722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 1694747 - 1694859
Alignment:
Q  95 aagaacattct-catgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaat-aa 192  Q
    ||||||||||| |||||||||||||||||||||   |||||||||||||||||||||    || |||  ||||||||| |||||||||| ||||||| ||    
T  1694747 aagaacattcttcatgaaacatttctcacaaaacatattagtagataacaagttaaa----aactatagaatgtttgtgatctttaaaatatcaaataaa 1694842  T
Q  193 ggattttttcctcaaca 209  Q
    ||||||| | |||||||    
T  1694843 ggattttgttctcaaca 1694859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 5599773 - 5599715
Alignment:
Q  95 aagaacattct-catgaaacatttctcacaaaattcattagtagataacaagttaaaaa 152  Q
    ||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||    
T  5599773 aagaacattcttcatgaaacatttctcacaaaacatattagtagataacaagttaaaaa 5599715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 5609419 - 5609361
Alignment:
Q  95 aagaacattct-catgaaacatttctcacaaaattcattagtagataacaagttaaaaa 152  Q
    ||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||    
T  5609419 aagaacattcttcatgaaacatttctcacaaaacatattagtagataacaagttaaaaa 5609361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 22158504 - 22158601
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | ||||| ||  |||||||||||||||||| |||||||||||||||    
T  22158504 cattctcatgaaacaaattctcacaaaaaaaattagtagataacaagattaaata-aattaata--tgtttgtaatctttaaaatatcaaataaggattt 22158600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 22488449 - 22488351
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  ||| | |||||||||||||||||||||||||||||| ||||    
T  22488449 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaaacatcaaataagaattt 22488352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 4635160 - 4635125
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  4635160 atgtttgtaatctttaaaacatcaaataaggatttt 4635125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 13816509 - 13816559
Alignment:
Q  100 cattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaa 151  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| |||||    
T  13816509 cattctcatgaaacatg-ctcacaaaattcattagtagataacaagataaaa 13816559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 18568251 - 18568216
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  18568251 atgtttgtaatctttaaaacatcaaataaggatttt 18568216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 24412042 - 24412007
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  24412042 atgtttgtaatctttaaaacatcaaataaggatttt 24412007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 24421502 - 24421467
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  24421502 atgtttgtaatctttaaaacatcaaataaggatttt 24421467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 30445803 - 30445838
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  30445803 atgtttgtaatctttaaaacatcaaataaggatttt 30445838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 30455175 - 30455210
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  30455175 atgtttgtaatctttaaaacatcaaataaggatttt 30455210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 30460233 - 30460268
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  30460233 atgtttgtaatctttaaaacatcaaataaggatttt 30460268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 2641513 - 2641466
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataaggacctttt 55  Q
    ||||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  2641513 aaagttcatttatgtcattttgcttatttgctttgataatgacgtttt 2641466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 22129416 - 22129451
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||| ||||||    
T  22129416 atgtttgtaatctttaaaacatcaaataaagatttt 22129451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 24245178 - 24245225
Alignment:
Q  95 aagaacattctcatgaaacatttctcacaaaattcattagtagataaca 143  Q
    |||| |||||| |||||||||  ||||||||||||||||||||||||||    
T  24245178 aagatcattcttatgaaacatg-ctcacaaaattcattagtagataaca 24245225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 3394787 - 3394688
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggatt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||| || | | |  | |||||||| ||||||||||||||||  |||||||    
T  3394787 aacattctcatgaaacatttctcacaaaattcattagtagataacaatataaataaaagtaa--atatgtttgttatctttaaaacatcaataaaggatt 3394690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 1790196 - 1790102
Alignment:
Q  95 aagaacattct-catgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataa 192  Q
    ||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||| |    ||  ||||||||| ||||||||||||||||||||    
T  1790196 aagaacattcttcatgaaacatttctcacaaaacatattagtagataacaagttaaaaacc----atagaatgtttgtgatctttaaaacatcaaataa 1790102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 1799690 - 1799596
Alignment:
Q  95 aagaacattct-catgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataa 192  Q
    ||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||| |    ||  ||||||||| ||||||||||||||||||||    
T  1799690 aagaacattcttcatgaaacatttctcacaaaacatattagtagataacaagttaaaaacc----atagaatgtttgtgatctttaaaacatcaaataa 1799596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 27421550 - 27421450
Alignment:
Q  95 aagaacattctc-atgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataag 193  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||  ||  | ||||||| ||| |  |||||||||| ||||||||||||||||||    
T  27421550 aagaacattctctatgaaacatttctcacaaaatacatttgtagataaatag--ataaaacaaatataacctgtttgtaatatttaaaacatcaaataag 27421453  T
Q  194 gat 196  Q
    |||    
T  27421452 gat 27421450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 22631435 - 22631352
Alignment:
Q  105 tcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataa 192  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||     |||  ||||||||| ||||||||||||||||||||    
T  22631435 tcatgaaacatttctcacaaaacatattagtagataacaagttaaaaac----tatagaatgtttgtgatctttaaaacatcaaataa 22631352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 31711380 - 31711478
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  ||| | |||||||||||||||||||||||||||||||||||    
T  31711380 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaaacatcaaataaggattt 31711477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 3395939 - 3395893
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  3395939 aacattctcatgaaatatttcttacaaaattcattagtagataacaa 3395893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 24023667 - 24023767
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  ||| | |||||||||||||||||| ||||||||||||||||    
T  24023667 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaa-catcaaataaggattt 24023763  T
Q  199 tttc 202  Q
    ||||    
T  24023764 tttc 24023767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 988303 - 988167
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataaggaccttttttaacttgtcttgtgagcaaagaaccttcttct-tatgttaagaacattctc 106  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||| |||||  ||||| | |  ||||  ||||||| | |   ||||||||||||    
T  988303 aaagttcatttatgtccttttgcttatttgctttgataagga-cgttttcaacttcacttgtaatcttagaatgttcttctctttaacaagaacattctc 988205  T
Q  107 atgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||  || |||||||||||||    
T  988204 atgaaacatttctcacaaaacacactagtagataacaa 988167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 12924395 - 12924352
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12924395 aacattctcatgaaacatttctcacaaaattcattagtagataa 12924352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 7807664 - 7807617
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataaggacctttt 55  Q
    ||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  7807664 aaagttcatttatgtccttttgtttatttgctttgataaggacgtttt 7807617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 18144564 - 18144614
Alignment:
Q  100 cattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaa 151  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| |||||    
T  18144564 cattctcatgaaacatg-ctcacaaaattcattagtagataacaagataaaa 18144614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 20709875 - 20709840
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  20709875 atgtttgtaatctttaaaacatcaaataaggatttt 20709840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 25052181 - 25052235
Alignment:
Q  95 aagaacattctcatgaaacatttctcacaaaattcattagtagataacaagttaaa 150  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  25052181 aagatcattctcatgaaacatg-ctcacaaaattcattagtagataacaagataaa 25052235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 7789988 - 7790084
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  |||  |||||||||||||||||||||||||| |||||||||    
T  7789988 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tat--aatgtttgtaatctttaaaacatcaattaaggattt 7790083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 7837088 - 7837050
Alignment:
Q  8 aaagtccatttatgtccttttgcttatttgctttgataa 46  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  7837088 aaagttcatttatgtccttttgcttatttgctttgataa 7837050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 7837001 - 7836952
Alignment:
Q  95 aagaacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||||||||||||||  ||  ||||||||||||    
T  7837001 aagaacattctcatgaaacatttctcacaaaacacaccagtagataacaa 7836952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 24268914 - 24268869
Alignment:
Q  100 cattctcatgaaacatttctcacaaaattcattagtagataacaag 145  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||    
T  24268914 cattctcatgaaacatttatcacaaaacacattagtagataacaag 24268869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 18884288 - 18884338
Alignment:
Q  100 cattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaa 151  Q
    |||||| |||||||||  |||||||||||||||||||||||||||| |||||    
T  18884288 cattcttatgaaacatg-ctcacaaaattcattagtagataacaagataaaa 18884338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 25038148 - 25038198
Alignment:
Q  100 cattctcatgaaacatttctcacaaaattcattagtagataacaagttaaaa 151  Q
    |||||||||| |||||  |||||||||||||||||||||||||||| |||||    
T  25038148 cattctcatggaacatg-ctcacaaaattcattagtagataacaagataaaa 25038198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 7807577 - 7807529
Alignment:
Q  95 aagaacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||||||||||| ||||||||  || |||||||||||||    
T  7807577 aagaacattctcatgaaacattt-tcacaaaacacactagtagataacaa 7807529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 18241430 - 18241383
Alignment:
Q  95 aagaacattctcatgaaacatttctcacaaaattcattagtagataaca 143  Q
    |||| |||||| |||||||||  ||||||||||||||||||||||||||    
T  18241430 aagatcattcttatgaaacatg-ctcacaaaattcattagtagataaca 18241383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 18250881 - 18250834
Alignment:
Q  95 aagaacattctcatgaaacatttctcacaaaattcattagtagataaca 143  Q
    |||| |||||| |||||||||  ||||||||||||||||||||||||||    
T  18250881 aagatcattcttatgaaacatg-ctcacaaaattcattagtagataaca 18250834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 42897095 - 42897138
Alignment:
Q  100 cattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||    
T  42897095 cattctcat-aaacatttctcataaaaatcattagtagataacaa 42897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 23252 - 23139
Alignment:
Q  95 aagaacattct-catgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataa- 192  Q
    ||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||     |||  ||||||||| ||||||||||||||||||||     
T  23252 aagaacattcttcatgaaacatttctcacaaaacatattagtagataacaagttaaaaac----tatagaatgtttgtgatctttaaaacatcaaataat 23157  T
Q  193 ggattttttcctcaacac 210  Q
    ||||||| | ||||||||    
T  23156 ggattttgttctcaacac 23139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0920 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 1862 - 1816
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1862 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 1816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 14635886 - 14635932
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14635886 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 14635932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 14645586 - 14645632
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14645586 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 14645632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 15948518 - 15948564
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15948518 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 15948564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 33293308 - 33293354
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33293308 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 33293354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 4119342 - 4119440
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  ||| | |||||||||||||||||||||||||||||||||||    
T  4119342 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaaacatcaaataaggattt 4119439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 7590297 - 7590199
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||| ||||||||||  |||||||||||   |||||||||||||||| | ||| | |  ||| | |||||||||||||||||||||||||||||||||||    
T  7590297 cattatcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaaacatcaaataaggattt 7590200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 7592278 - 7592180
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    ||||||||||||| |  |||||||||||   |||||||||||||||| | ||| | |  ||| | |||||||||||||||||||||||||||||||||||    
T  7592278 cattctcatgaaaaaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaaacatcaaataaggattt 7592181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 14774790 - 14774688
Alignment:
Q  105 tcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaat-aaggattttttcc 203  Q
    |||||||| |||| ||||||||   |||||||||||||||||||||||     |||  ||||||||| |||||||||||||||||| ||||||||| | |    
T  14774790 tcatgaaaaatttatcacaaaacatattagtagataacaagttaaaaac----tatagaatgtttgtgatctttaaaacatcaaataaaggattttgttc 14774695  T
Q  204 tcaacac 210  Q
    |||||||    
T  14774694 tcaacac 14774688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 15225243 - 15225141
Alignment:
Q  105 tcatgaaacatttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaat-aaggattttttcc 203  Q
    |||||||| |||| ||||||||   |||||||||||||||||||||||     |||  ||||||||| |||||||||||||||||| ||||||||| | |    
T  15225243 tcatgaaaaatttatcacaaaacatattagtagataacaagttaaaaac----tatagaatgtttgtgatctttaaaacatcaaataaaggattttgttc 15225148  T
Q  204 tcaacac 210  Q
    |||||||    
T  15225147 tcaacac 15225141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 2206860 - 2206905
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggattttttcctcaaca 209  Q
    ||||||||||| |||||||||||||||||| ||||| || ||||||    
T  2206860 atgtttgtaatatttaaaacatcaaataagaattttgtcttcaaca 2206905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 22064607 - 22064653
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22064607 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 22064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 22065346 - 22065300
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22065346 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 22065300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 23883546 - 23883500
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23883546 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 23883500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 23896521 - 23896619
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  ||| | ||||||||||||||||||||||||||||| |||||    
T  23896521 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaaacatcaaataatgattt 23896618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 19599096 - 19599141
Alignment:
Q  97 gaacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  19599096 gaacattctcatga--catttctcacaaaattcattagtagataacaa 19599141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 23117842 - 23117894
Alignment:
Q  100 cattctcat-gaaacatttctcacaaaattcattagtagataacaagttaaaa 151  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||| |||||    
T  23117842 cattctcattgaaacatttctcacaaaattgattagtagataacaagataaaa 23117894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 18419766 - 18419731
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  18419766 atgtttgtaatctttaaaacatcaaataaggatttt 18419731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 19024920 - 19024966
Alignment:
Q  100 cattctcat-gaaacatttctcacaaaattcattagtagataacaag 145  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  19024920 cattctcattgaaacatttctcacaaaattgattagtagataacaag 19024966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 25912153 - 25912120
Alignment:
Q  118 ctcacaaaattcattagtagataacaagttaaaa 151  Q
    |||||||||||||||||||||||||||| |||||    
T  25912153 ctcacaaaattcattagtagataacaagataaaa 25912120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 5378 - 5423
Alignment:
Q  97 gaacattctcatgaaacatttctcacaaaattcattagtagataac 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5378 gaacattctcatgaaacatttctcacaaaattcattagtagataac 5423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0773 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0773
Description:

Target: scaffold0773; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 1942 - 1896
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  1942 aacattctcatgaaatatttctcacaaaattcattagtagataacaa 1896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 31725 - 31823
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  ||| | |||||||||||||||||||||||||||||||||||    
T  31725 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaaacatcaaataaggattt 31822  T

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Target: scaffold0040; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 9295 - 9187
Alignment:
Q  102 ttctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattttt 200  Q
    |||| ||||||||| ||||||||||||  ||||||||||||||||  |  |||  | ||| | |||||||||||||||||||||||||||| |||||||     
T  9295 ttcttatgaaacatattctcacaaaatgaattagtagataacaag--actaaatgaatataatatgtttgtaatctttaaaacatcaaatacggattttg 9198  T
Q  201 tcctcaacactt 212  Q
    | ||||||||||    
T  9197 t-ctcaacactt 9187  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 412576 - 412478
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  ||| | |||||||||||||||||||||||||||||||||||    
T  412576 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaaacatcaaataaggattt 412479  T

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Target: scaffold1409 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1409
Description:

Target: scaffold1409; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 339 - 385
Alignment:
Q  98 aacattctcatgaaacatttctcacaaaattcattagtagataacaa 144  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  339 aacattctcttgaaacatttctcacaatattcattagtagataacaa 385  T

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Target: scaffold0233 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 27031 - 27129
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  ||| | |||||||||||||||||||||| ||||||||||||    
T  27031 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tataatatgtttgtaatctttaaaacattaaataaggattt 27128  T

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Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 95406 - 95441
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  95406 atgtttgtaatctttaaaacatcaaataaggatttt 95441  T

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Target: scaffold0028; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 104847 - 104882
Alignment:
Q  164 atgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  104847 atgtttgtaatctttaaaacatcaaataaggatttt 104882  T

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Target: scaffold0482 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 1925 - 1829
Alignment:
Q  100 cattctcatgaaacat-ttctcacaaaattcattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatcaaataaggattt 198  Q
    |||||||||||||||  |||||||||||   |||||||||||||||| | ||| | |  |||  |||||||||||||||||||||||||| |||||||||    
T  1925 cattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaa--tat--aatgtttgtaatctttaaaacatcaattaaggattt 1830  T

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Target: scaffold0482; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 2751 - 2715
Alignment:
Q  163 aatgtttgtaatctttaaaacatcaaataaggatttt 199  Q
    |||||||||||||||||||||||||| || |||||||    
T  2751 aatgtttgtaatctttaaaacatcaattatggatttt 2715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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