View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16835_low_3 (Length: 454)
Name: NF16835_low_3
Description: NF16835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16835_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 185 - 436
Target Start/End: Original strand, 37090061 - 37090305
Alignment:
| Q |
185 |
aacaagaacgtacacaatgcagcaaagctctttgagagtagagtgtagagtgctgtttttcacgttctgaattttcacacagcaattgcgtacaaataaa |
284 |
Q |
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| T |
37090061 |
aacaagaacgtacacaatgcagcaaagctcttggagagtag-------agtgctgtttttcacgttctgaattttcacacagcaattgcgtacaaataaa |
37090153 |
T |
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| Q |
285 |
atcaaaaccgaaagacaaattgaattgcatgtatataatatattgatattatatctacctgtgtatgtacctatgcatgtataccaatcaatgtgtcaaa |
384 |
Q |
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| T |
37090154 |
atcaaaaccgaaagacaaattgaattgcatgtatataatatattgatattatatctacctgtgtatgtacctgtgcatgtatacccatcaatgtgtcaaa |
37090253 |
T |
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| Q |
385 |
cccaataacaaattgtgtaaattgcaaaaagagtataatcttacaaatcttg |
436 |
Q |
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| T |
37090254 |
cccaataacaaattgtgtaaattgcaaaaagagtataatcttacaaatcttg |
37090305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 37089875 - 37090011
Alignment:
| Q |
1 |
caacctctttggcgtgataatatgcatccaatttcaactgtttcattcaatgcaaaaattgagcaagttattgttccctgaaacacaaacaaagacaatt |
100 |
Q |
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| T |
37089875 |
caacctctttgacgtgataatatgcatccaatttcaactgtttcattcaatgcaaaaattgagcaagttattgttccctgaaacacaaacaaagacaatt |
37089974 |
T |
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| Q |
101 |
gtagctaacatcatcattagtcctattaaataatcca |
137 |
Q |
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| T |
37089975 |
gtaactaacatcatcattagtcctattaaataatcca |
37090011 |
T |
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