View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16835_low_4 (Length: 355)

Name: NF16835_low_4
Description: NF16835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16835_low_4
NF16835_low_4
[»] chr1 (2 HSPs)
chr1 (29-355)||(5129589-5129914)
chr1 (278-355)||(26324506-26324584)
[»] chr5 (8 HSPs)
chr5 (260-355)||(8527890-8527985)
chr5 (139-352)||(8643414-8643630)
chr5 (235-353)||(8640456-8640574)
chr5 (260-340)||(8636121-8636201)
chr5 (262-352)||(8534468-8534558)
chr5 (260-313)||(8549058-8549111)
chr5 (260-313)||(9075311-9075364)
chr5 (235-299)||(9002289-9002353)
[»] chr4 (1 HSPs)
chr4 (260-355)||(9442057-9442152)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 29 - 355
Target Start/End: Original strand, 5129589 - 5129914
Alignment:
Q  29 aacaaggtagcaagtcattctccgaaaaccatagataatgactaatgaacagagattaaattttacaataaaaagaaaagacatcatttgcatcctaaaa 128  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  5129589 aacaaggtagcaagtcattctctgaaaaccatagataatgactaatgaacagagattaaagtttacaa-aaaaagaaaagacatcattttcatcctaaaa 5129687  T
Q  129 caagaactttcataaccctacctattgtatggaagttgcttcatttcagttgtactctttcatcaaaagtctcaccggaggagggtacctgtcaagagtc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5129688 caagaactttcataaccctacctattgtatggaagttgcttcatttcagttgtactctttcatcaaaagtctcaccggaggagggtacctgtcaagagtc 5129787  T
Q  229 atattgaagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaa 328  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5129788 atattaaagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaggcctaaataatgtgcctaaaa 5129887  T
Q  329 ttgtactaagcaggagtcagaatacca 355  Q
    |||||||||||||||||||||||||||    
T  5129888 ttgtactaagcaggagtcagaatacca 5129914  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 26324584 - 26324506
Alignment:
Q  278 tataaaataagaccaatattacgtaacaaagcctaa-ataatgtgcctaaaattgtactaagcaggagtcagaatacca 355  Q
    |||||||||| ||||||||||| |||||||| ||||  |||  | |||||||||||| |||||| | ||||||||||||    
T  26324584 tataaaataacaccaatattacataacaaagtctaagttaacatacctaaaattgtaataagcaagggtcagaatacca 26324506  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 8527890 - 8527985
Alignment:
Q  260 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagcaggagtcagaatacca 355  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| |||  | |||||||||||| |||||||| ||||||||||||    
T  8527890 ttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagcaggggtcagaatacca 8527985  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 352
Target Start/End: Original strand, 8643414 - 8643630
Alignment:
Q  139 cataaccctacctattgtatggaagttgcttcatttcagttgtactctttcatcaaaag--tctcaccg---gaggagggtacctgtcaagagtcat-at 232  Q
    ||||||||| ||| ||||||| ||  | |||| ||| ||||||||||||||||||||||  |||||| |   ||||||||||| |||||||  |||| ||    
T  8643414 cataacccttccttttgtatgaaaaatccttctttttagttgtactctttcatcaaaagcctctcacagaaggaggagggtacttgtcaag--tcatcat 8643511  T
Q  233 tgaagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgt 332  Q
    | ||||||||||||| ||||    |  |||||||||||||||||||||||||||| |||||||||||  || | ||||||| ||| ||||||||||||||    
T  8643512 tcaagatcttcatttttttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaaattgt 8643610  T
Q  333 actaagcaggagtcagaata 352  Q
    | || ||| | |||||||||    
T  8643611 agtatgcaagggtcagaata 8643630  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 8640456 - 8640574
Alignment:
Q  235 aagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtac 334  Q
    |||||||||||||  ||| ||||  ||||| |||||||||||||||||||||| ||||||  |||| ||||||| |||| ||| |||||||||||||||     
T  8640456 aagatcttcattttcttcacgcaatttaaattttgcacacctatataaaataacaccaatggtacgaaacaaagtctaagtaacgtgcctaaaattgtag 8640555  T
Q  335 taagcaggagtcagaatac 353  Q
    |||||||| |||| |||||    
T  8640556 taagcaggggtcaaaatac 8640574  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 8636121 - 8636201
Alignment:
Q  260 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagca 340  Q
    |||||||||||| |||||||||||||||  |||||||||||||||| ||||| | |||||| |||||||||||| ||||||    
T  8636121 ttaaaatttgcatacctatataaaataacgccaatattacgtaacagagccttagtaatgtacctaaaattgtattaagca 8636201  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 352
Target Start/End: Original strand, 8534468 - 8534558
Alignment:
Q  262 aaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagcaggagtcagaata 352  Q
    |||||||| ||||||||||||||||| ||||||||||| | || ||| |||| |||  | |||||||||||| |||||| | |||||||||    
T  8534468 aaaatttgaacacctatataaaataacaccaatattacatgacgaagtctaagtaacatacctaaaattgtaataagcaagggtcagaata 8534558  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 8549111 - 8549058
Alignment:
Q  260 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaa 313  Q
    ||||| ||||||| |||||| ||||||| ||||||||||| |||||||| ||||    
T  8549111 ttaaactttgcacgcctatacaaaataacaccaatattacataacaaaggctaa 8549058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 9075364 - 9075311
Alignment:
Q  260 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaa 313  Q
    |||||||||||||||||||||||||||| | || ||||||  ||||||| ||||    
T  9075364 ttaaaatttgcacacctatataaaataacaacagtattacacaacaaagtctaa 9075311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 9002289 - 9002353
Alignment:
Q  235 aagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattac 299  Q
    |||||||||||||  ||| ||||  ||||| |||||||||||||| |||| || |||||||||||    
T  9002289 aagatcttcattttcttcacgcaatttaaactttgcacacctatacaaaacaacaccaatattac 9002353  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 9442057 - 9442152
Alignment:
Q  260 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaagcctaaataatgtgcctaaaattgtactaagcaggagtcagaatacca 355  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| |||  | |||||||||||| |||||| | ||||||||||||    
T  9442057 ttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagcaagggtcagaatacca 9442152  T

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