View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16835_low_5 (Length: 340)
Name: NF16835_low_5
Description: NF16835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16835_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 37089497 - 37089837
Alignment:
| Q |
1 |
actaatcaccaccacctaggtcagaaattttagatcttttcaaacctcaagaaagaaagaaaaaatataaaccattatatgcctacaaaaaatcataaat |
100 |
Q |
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| T |
37089497 |
actaatcaccaccacctaggtcagaaattttagatcttttcaaacctcaagaaagaa-gaaaaattataaaccattatatgcctacaaaaaatcataaat |
37089595 |
T |
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| Q |
101 |
tcagcacaatagctaacccaaaaatatgacacatcactcaacaatagctcttccaagagaaaacacaatcaaagtgtcttgagcaagaatgaaaaaagac |
200 |
Q |
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| T |
37089596 |
tcagcacaatagctaacccaaaaatatgacacatcactcaacaatagctcttccaatagaaaacacaatcaaagtgtcttaagcaagaatgaaaaaagac |
37089695 |
T |
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| Q |
201 |
aaaataaaatatgcacgatagtaacaataaattttcaattccatc--aacattgataagatctgaaaatttgatgtgtgatcaattaaaaacaaagtaaa |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37089696 |
aaaataaaatatgcacgatagtaacaataaattttcaattccatcaaaacattgataagatctgaaaatttgatgtgtgatcaattaaaaacaaagtaaa |
37089795 |
T |
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| Q |
299 |
caaataacactctagaaacacagattcataaaacatggttta |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
37089796 |
caaataacactctagaaacacagattcataaaacatggttta |
37089837 |
T |
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