View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16835_low_8 (Length: 283)
Name: NF16835_low_8
Description: NF16835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16835_low_8 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 41709421 - 41709170
Alignment:
| Q |
14 |
gaactcacaatcacaagtatgtttggatcatcaatctcgttattattttgatttttaaaaaatctcaaatatatacaaaaatatagactttgtcctcaaa |
113 |
Q |
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| T |
41709421 |
gaactcacaatcacaagtatgtttggatcatcaatctcgttataattttgatttttaaaaaatctcaaatatatacaaaaatatagactttgtcctcaaa |
41709322 |
T |
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| Q |
114 |
aaccctctaaaaccagcaatccaaacatacccttagagacccttctgtttagaatctagatgcacgaaatttcatgtaaatgaagcatattatcggagta |
213 |
Q |
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| T |
41709321 |
aaccctctaaaaccagcaatccaaacatacccttagagacccttctgtttagaatctagatgcacgaaattgcatgtaaatgaagcatattatcggagta |
41709222 |
T |
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| Q |
214 |
aagcaatttgacactcttaaagttggggttgaaatcgaaacgtagaaacaca |
265 |
Q |
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| T |
41709221 |
aagcaatttgacactcttaaagttggggttgaaatcgaaacgtagaaacaca |
41709170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 11728898 - 11728808
Alignment:
| Q |
15 |
aactcacaatcacaagtatgtttggatcatcaatctcgttattattttgatttttaaaaaatctcaaatatatacaaaaatatagactttg |
105 |
Q |
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| T |
11728898 |
aactcacaatcaaaagtatgtttggatcatgaatctcgttattcttatgattttaaaaaaatctcacatatatacaaaaatatagactttg |
11728808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 14806513 - 14806591
Alignment:
| Q |
18 |
tcacaatcacaagtatgtttggatcatcaatctcgttattattttgatttttaaaaaatctcaaatatatacaaaaata |
96 |
Q |
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| T |
14806513 |
tcacaatcacaagtatgtttggataatgaatctcgttattcttttgatttaaaaaaaatctctaatatagacaaaaata |
14806591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 14805520 - 14805437
Alignment:
| Q |
14 |
gaactcacaatcacaagtatgtttggatcatcaatctcgttattattttgat-ttttaaaaaatctcaaatatatacaaaaata |
96 |
Q |
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| T |
14805520 |
gaactcacaatcacatgtatatttggataatgaatctcgttattcttttgattttttaaaaaatctctaatatagacaaaaata |
14805437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 11730586 - 11730677
Alignment:
| Q |
17 |
ctcacaatcacaagtatgtttggatcatcaatctcgttattattttgattttt--aaaaaatctcaaatatata-caaaaatatagactttg |
105 |
Q |
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| T |
11730586 |
ctcaaaatcacaataatgtttggatcatgaatctcattattcttttaatttttaaaaaaaatcccgaatatatataaaaaatatagactttg |
11730677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 25009904 - 25009824
Alignment:
| Q |
14 |
gaactcacaatcacaagtatgtttggatcatcaatctcgttattattttgatttttaaaaaatctcaaatatatacaaaaata |
96 |
Q |
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| T |
25009904 |
gaactcacaatcacaagtatgtttggatcataaatctcattattcttttgatttt--aaaaaactctaatatagacaaaaata |
25009824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 105636 - 105696
Alignment:
| Q |
36 |
ttggatcatcaatctcgttattattttgatttttaaaaaatctcaaatatatacaaaaata |
96 |
Q |
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| T |
105636 |
ttggataatgaatctcgttattcatttgatttttaaaaaatgtctaatataaacaaaaata |
105696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 6336013 - 6335961
Alignment:
| Q |
51 |
cgttattattttgatttttaaaaaatctcaaatatatacaaaaatatagactt |
103 |
Q |
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| T |
6336013 |
cgttattctttccattttttaaaaatctcaaatacatacaaaaatatagactt |
6335961 |
T |
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