View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16836_high_1 (Length: 439)
Name: NF16836_high_1
Description: NF16836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16836_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 53842592 - 53842272
Alignment:
| Q |
18 |
acactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttggttggtggtgctagaagatttgaattaactggtccttc |
117 |
Q |
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| T |
53842592 |
acactgctaattcttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttggttggtggtgctagaagatttgaattaactggtccttc |
53842493 |
T |
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| Q |
118 |
gatattggagatgatattaaaagagtatcctaattctgatctttttctgcatagtcctttagactcagatgcgttcaaattctcattgttgaagcttgca |
217 |
Q |
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| T |
53842492 |
gatattggagatgatattaaaagagtatcctaattctgatctttttctgcatagtcctttagactcagatgcgttcaaattctcattgttgaagcttgca |
53842393 |
T |
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| Q |
218 |
ccaaaagttgccgccgttaacatatttcaccctcaactgttgccggagaatgagtcttccgttcgtgttctcacggcgcagaactcgcctaacggaattc |
317 |
Q |
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| T |
53842392 |
ccaaaagttgccgccgttaacatatttcaccctcaaccgttgcaggagaatgagtcttccgttcgtgttctcacggcgcagaactcgcctaacggaattc |
53842293 |
T |
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| Q |
318 |
aggtataaatgactatttccc |
338 |
Q |
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| T |
53842292 |
aggtataaatgactatttccc |
53842272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 31 - 321
Target Start/End: Complemental strand, 53844282 - 53843992
Alignment:
| Q |
31 |
ttcaccttcaaaagatgaattgttacgatccaaaattgctgtatgtttggttggtggtgctagaagatttgaattaactggtccttcgatattggagatg |
130 |
Q |
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||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||| || ||||| |||||||| ||| |
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| T |
53844282 |
ttcaccttcgaaagatgaattgttacgatccaaaattgcggtgtgtttggttggtggtgctagaaggttcgaattaacgggaccttcaatattggaaatg |
53844183 |
T |
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| Q |
131 |
atattaaaagagtatcctaattctgatctttttctgcatagtcctttagactcagatgcgttcaaattctcattgttgaagcttgcaccaaaagttgccg |
230 |
Q |
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| T |
53844182 |
atactgaaagagtacccgaattcggatcttttcttgcatagtccgttagactcagattcattcaagttctcatttctcaagtttgcgccaaatgttgctg |
53844083 |
T |
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| Q |
231 |
ccgttaacatatttcaccctcaactgttgccggagaatgagtcttccgttcgtgttctcacggcgcagaactcgcctaacggaattcaggt |
321 |
Q |
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| T |
53844082 |
ctgttaaaatatttcgccctcaatagttccaggagaatgagtcttttgttcgtgttctcacggcgcacaagttgcctaacggaatccaggt |
53843992 |
T |
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