View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16837_low_2 (Length: 492)
Name: NF16837_low_2
Description: NF16837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16837_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 29839940 - 29839468
Alignment:
| Q |
1 |
agagtagtactatgtaggaagacataataaccaagtataacgacgcaaataactgagaggaaaagcgtataccttagcttcaacatatttccatttcaca |
100 |
Q |
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| T |
29839940 |
agagtagtactatgctggaagacataataaccaagtataacgacataaataactgagaggaaaagcgtataccttagcttcaacatatttccatttcaca |
29839841 |
T |
|
| Q |
101 |
agaaggtgatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctgtaaaacagaacaatgtaagtaatcaaatcaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29839840 |
agaaggtgatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctgtaaaacagaacaatgtaagtaatcaaatcaatttt |
29839741 |
T |
|
| Q |
201 |
ttctgaacaaatgcacacaagttaaagacataaaaagagcttattgaataaaaacaaacatatctaaggacaaaataaatgttatgacacaatgcagacc |
300 |
Q |
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| T |
29839740 |
ttctgaacaaatgcacacatgttaaagacataaaaagagcttattgaataaaaacaaacatatctaaggacaaaataaatgttatgacacaatgcagacc |
29839641 |
T |
|
| Q |
301 |
taaaaggaaacaagtcgaacatcccataagaaattttcgacataaggnnnnnnnncagtcaagtacggatctcatatcataagaaacaagttatcatacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29839640 |
taaaaggaaacaagtcgaacatcccataagaaattttcgacataagcaaaaaaaacagttaagtacggatctcatatcataagaaacaagttatcatacc |
29839541 |
T |
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| Q |
401 |
tgttgccaacatttcagcatctcacatgcaagtctacgcttcactgcaagagttgctttagcactatcaatcg |
473 |
Q |
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| T |
29839540 |
tgttgccaacatttcagcatctcacatgcaagtctacgcttcactgcaagagttgctttagcactatcaatcg |
29839468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 34625923 - 34625979
Alignment:
| Q |
397 |
tacctgttgccaacatttcagcatctcacatgcaagtctacgcttcactgcaagagt |
453 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||| |
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| T |
34625923 |
tacctgttgccaatatttcaccatctcacatgcaagtctacgcttcaccgcgagagt |
34625979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 34625322 - 34625379
Alignment:
| Q |
108 |
gatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctg |
165 |
Q |
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| T |
34625322 |
gatgtttttcaccccaaccattcgctaacggaagattcataatgttatcttgtgcctg |
34625379 |
T |
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