View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16837_low_6 (Length: 329)
Name: NF16837_low_6
Description: NF16837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16837_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 30960653 - 30960953
Alignment:
| Q |
13 |
aatatccacatcataagcaaattctctggaaggtgtagttcctcactcccttcttcattcttactagatggcctaagagaagaatgtaaactttcttttt |
112 |
Q |
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| T |
30960653 |
aatatccacatcataagcaaattctctgagaggtgtagttcctcactcccttcttcattcttactagatggcctaagagaagaatgtaaactttcttttt |
30960752 |
T |
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| Q |
113 |
tcattttcgatcatcattaatccatcctttgatgaccaaagctctcttgtttgtacattgggaagcaatgtgccccatcccaagacacttaaaacaatta |
212 |
Q |
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| T |
30960753 |
tcactttcgatcatcattaatccatcctttgatgaccaaagctctcttgtttgtacattgggaagcaatgtaccccatcccaagacacttaaaacaatta |
30960852 |
T |
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| Q |
213 |
atagaagtagtaaaagaagtggaagtagatttattttgagttaaaagttatttttactttctg---ggtagatcatcattacgttttctcatgaatcaat |
309 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30960853 |
atagaagtagtaaaagaagtggaagtagattta-tttgagttaaaagttatttttactttctgggaggtagatcatcattacgttttctcatgaatcaat |
30960951 |
T |
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| Q |
310 |
ag |
311 |
Q |
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|| |
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| T |
30960952 |
ag |
30960953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 3806436 - 3806353
Alignment:
| Q |
141 |
ttgatgaccaaagctctcttgtttgtacattgggaagcaatgtgccccatcccaagacacttaaaacaattaatagaagtagta |
224 |
Q |
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|||||||||||| |||| ||||||| ||| |||||||||||||||||| | |||||||||||||| || || ||||||||||| |
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| T |
3806436 |
ttgatgaccaaaactcttttgtttggacaatgggaagcaatgtgcccccttccaagacacttaaagcatttcgtagaagtagta |
3806353 |
T |
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