View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16837_low_7 (Length: 288)
Name: NF16837_low_7
Description: NF16837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16837_low_7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 48566727 - 48567000
Alignment:
| Q |
15 |
cagagacagttgaatgcatacatgtatttaaatacctttattctttgagttgacttttacaatgagattcatgtttatttaacaagttatacggttgttt |
114 |
Q |
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| T |
48566727 |
cagagacggttgaatacatacatgtatttaaatacctttattctttgagttgatttttacaatgagattcatgtttatttaacaagttatacggttgttt |
48566826 |
T |
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| Q |
115 |
caaagtttaaagttccaaatctcttcctcgaaacgaaaatgtttaaaatctcaattatttaagttcaaattccccactgtgccctcatggaacccgcgaa |
214 |
Q |
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| T |
48566827 |
caaagtttaaagttccaaatctcttcctcaaaacgaaaatgtttaaaatctcaattatttaagttcaaattccccactgtgccctcatggaacccgcgaa |
48566926 |
T |
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| Q |
215 |
acatagtttgagacttagtaagtgagttgaaattttggcaattgaatttccatcatcatcaagcaatttggtac |
288 |
Q |
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| T |
48566927 |
atatagtttgagacttagtaagtgagttgaaattttggcaattgaatttccatcatcatcaagcaatttggtac |
48567000 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 582260 - 582313
Alignment:
| Q |
45 |
aatacctttattctttgagttgacttttacaatgagattcatgtttatttaaca |
98 |
Q |
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| T |
582260 |
aatacctttatcctttgagttaacttttaagatgagattcaagttcatttaaca |
582313 |
T |
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