View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16837_low_8 (Length: 263)
Name: NF16837_low_8
Description: NF16837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16837_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 76 - 255
Target Start/End: Complemental strand, 19077356 - 19077177
Alignment:
| Q |
76 |
caccttaggttaatcaattgcagcttctacgcctaaactcatgggatataacttatcattgtactccatcaatctatcaacataactaagccctacaatt |
175 |
Q |
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| T |
19077356 |
caccttaggttaatcaattgcagcttctacgcctaaactcattggatataactcatcattgtactccatcaatctatcaacataactaagccctacaatt |
19077257 |
T |
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| Q |
176 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaaagctcaagtcctgcaaagttctt |
255 |
Q |
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| T |
19077256 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaaagctcaagttctgcaaaattctt |
19077177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 125 - 237
Target Start/End: Complemental strand, 19079008 - 19078896
Alignment:
| Q |
125 |
aacttatcattgtactccatcaatctatcaacataactaagccctacaatttctattttggattttcttcctctatttctggactatgcctttatatgtt |
224 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19079008 |
aactcatcattgtactccatcaatctatcaacataactaagccctacaatttctattttggattttcttccactatttctggactatgcctttatatgtt |
19078909 |
T |
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| Q |
225 |
taaataaaagctc |
237 |
Q |
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|||||||| |||| |
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| T |
19078908 |
taaataaaggctc |
19078896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 232
Target Start/End: Original strand, 19078091 - 19078247
Alignment:
| Q |
76 |
caccttaggttaatcaattgcagcttctacgcctaaactcatgggatataacttatcattgtactccatcaatctatcaacataactaagccctacaatt |
175 |
Q |
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|||||||||| | ||||||| ||||||| |||||| |||| |||| ||||| ||||| ||||||||||| |||||| |||| ||| | | | |||| |
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| T |
19078091 |
caccttaggtaagtcaattggagcttcttaacctaaaatcattggatgtaactcatcatcgtactccatcactctatctacatgacttatgcatttaatt |
19078190 |
T |
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| Q |
176 |
tctattttggattttcttcctctatttctggactatgcctttatatgtttaaataaa |
232 |
Q |
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|||||||| ||||||||||||||||| |||| ||||||||||| ||||| ||||| |
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| T |
19078191 |
tctattttatattttcttcctctatttttggaatatgcctttatcggtttagataaa |
19078247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19077431 - 19077390
Alignment:
| Q |
1 |
atctctccaatgattccataataatcttggcataggatatcc |
42 |
Q |
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| T |
19077431 |
atctctccaatgattccataataatcttggcataggatatcc |
19077390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19079156 - 19079115
Alignment:
| Q |
1 |
atctctccaatgattccataataatcttggcataggatatcc |
42 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
19079156 |
atctctccaatgattccataataatcttggcataggatatcc |
19079115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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