View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16837_low_9 (Length: 226)
Name: NF16837_low_9
Description: NF16837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16837_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 18061924 - 18061820
Alignment:
| Q |
73 |
gctccaaaagggtactgacactttagaaccggaaaatgacaatgatactgatgattatgataagctccaaagggctagttacattttagaaccggaaaat |
172 |
Q |
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| T |
18061924 |
gctccaaaagggtactgacactttagaaccggaaaatgacaatgatactgatgattatgataagatccaaagggctcattacattttagaaccggaaaat |
18061825 |
T |
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| Q |
173 |
gacag |
177 |
Q |
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||||| |
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| T |
18061824 |
gacag |
18061820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 55566067 - 55565985
Alignment:
| Q |
94 |
tttagaaccggaaaatgacaatgatactgatgattatgataagctccaaagggctagttacattttagaaccggaaaatgaca |
176 |
Q |
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| T |
55566067 |
tttagaaccggaaaatgacaatgatactgatgattatgataagatccaaagggctcattacattttagaaccggaaaatgaca |
55565985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 55566004 - 55565924
Alignment:
| Q |
94 |
tttagaaccggaaaatgacaatgatactgatgattatgataagctccaaagggctagttacattttagaaccggaaaatga |
174 |
Q |
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| T |
55566004 |
tttagaaccggaaaatgacaatgatactgatgattatgataagatccaaagggctcattacattttagaaccggaaaatga |
55565924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 18061760 - 18061707
Alignment:
| Q |
120 |
ctgatgattatgataagct-ccaaagggctagttacattttagaaccggaaaat |
172 |
Q |
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| T |
18061760 |
ctgatgatgatgataagctaccaaaaggctagtgacattttagaaccggaaaat |
18061707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 18061939 - 18061884
Alignment:
| Q |
121 |
tgatgattatgataagctccaaagggctagttacattttagaaccggaaaatgaca |
176 |
Q |
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| T |
18061939 |
tgatgattatgatacgctccaaaagggtactgacactttagaaccggaaaatgaca |
18061884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 18062045 - 18062003
Alignment:
| Q |
123 |
atgattatgataagctccaaagggctagttacattttagaacc |
165 |
Q |
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| T |
18062045 |
atgatgatgataagctccaaaaggctagtgacattttagaacc |
18062003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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