View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16838_high_11 (Length: 211)
Name: NF16838_high_11
Description: NF16838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16838_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 40953020 - 40952841
Alignment:
| Q |
18 |
aataaaatgattaaaaagttggttattctagctagaaatggcaagagaaaaagtggtataagaatctaaatcattgtnnnnnnnnnggtttgggttccca |
117 |
Q |
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| T |
40953020 |
aataaaatgattaaaaagttggttattctagctagaaatggcaagagaaaaagtggtataagaatctaaatcattgtaaaaaaaaaggtttgggttccca |
40952921 |
T |
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| Q |
118 |
tccttgtgcgctgttattcacatggttcatgaatttattcccttat----cattaatctcctaaagtcgtgtatctatat |
193 |
Q |
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| T |
40952920 |
tccttgtgcgctgttattcacatggttcatgaatttattcccttatcattcattaatctcctaaagtcgtgtatctatat |
40952841 |
T |
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