View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16838_high_2 (Length: 400)
Name: NF16838_high_2
Description: NF16838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16838_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 3655034 - 3654648
Alignment:
| Q |
1 |
aacccttgaatcaacctagccaaagtcaaatgcaagacttgcattccaaacgttgcaccagcacatgaccttcttccataactaaatggcaaatatccaa |
100 |
Q |
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| T |
3655034 |
aacccttgaatcaacctagccaaagtcaaatgcaagacttgcattccaaacgttgcaccagcacatgaccttcttccataactaaatggcaaatatccaa |
3654935 |
T |
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| Q |
101 |
agtcttgattctgaaaattatcaatttgatcatgaatattgaaaaacctctcaggttgaaattcattagggttggaccatactagtgggtccctttgcaa |
200 |
Q |
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| T |
3654934 |
attcttgattctgaaaattatcaatttgatcatgaatattgaaaaacctctcaggttgaaatttattagggttggaccatactagtgggtccctttgcaa |
3654835 |
T |
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| Q |
201 |
tttccataggttaataagcaaacgagtgcctttggtgactttgtagcctgccacgtggcaatcatcagtggcttctcttattcctgttaagggtgctggt |
300 |
Q |
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| T |
3654834 |
tttccataggttaataaacaaacgagtgcctttggtgactttgtagcctgccacgtggcaatcatcagtggcttctcttattcctgttaagggtgctggt |
3654735 |
T |
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| Q |
301 |
gggtataaacgaagtgtctctttgataatggcttgaagatatttaaggtttttgatgtcagattcttggacccatttgtcttttcct |
387 |
Q |
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| T |
3654734 |
gggtataaacgaagtgtctctttgataatggcttgaagatatttaaggtttttgatgtcagattcttggacccatttgtcttttcct |
3654648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 35026421 - 35026372
Alignment:
| Q |
292 |
ggtgctggtgggtataaacgaagtgtctctttgataatggcttgaagata |
341 |
Q |
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| T |
35026421 |
ggtgctggtgggtatagacgcaatgtttctttgataatggcttgaagata |
35026372 |
T |
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