View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16838_high_6 (Length: 255)
Name: NF16838_high_6
Description: NF16838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16838_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 24618553 - 24618418
Alignment:
| Q |
19 |
gccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacc |
118 |
Q |
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| T |
24618553 |
gccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacc |
24618454 |
T |
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| Q |
119 |
tgatcaatctcatcattaaactcaaccacaggatca |
154 |
Q |
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| T |
24618453 |
tgatcaatctcatcattaaactcaaccacaggatca |
24618418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 1344165 - 1344030
Alignment:
| Q |
19 |
gccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacc |
118 |
Q |
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||||||| |||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| ||||||| ||| || |
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| T |
1344165 |
gccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtcaattctttcctgtaaggcc |
1344066 |
T |
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| Q |
119 |
tgatcaatctcatcattaaactcaaccacaggatca |
154 |
Q |
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| T |
1344065 |
tgatcaatctcatcatcaaactcaaccacaagatca |
1344030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 1355422 - 1355557
Alignment:
| Q |
19 |
gccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacc |
118 |
Q |
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| T |
1355422 |
gccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtcaattctttcctgtaaggcc |
1355521 |
T |
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| Q |
119 |
tgatcaatctcatcattaaactcaaccacaggatca |
154 |
Q |
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| T |
1355522 |
tgatcaatctcatcatcaaactcaaccacaagatca |
1355557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 1361261 - 1361143
Alignment:
| Q |
27 |
ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaat |
126 |
Q |
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| T |
1361261 |
ctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcatt------aagtcatgatcaat |
1361168 |
T |
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| Q |
127 |
ctcatcattaaactcaaccacagga |
151 |
Q |
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| T |
1361167 |
ctcatcatcaaactcaaccacagga |
1361143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 1350687 - 1350615
Alignment:
| Q |
27 |
ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtc |
99 |
Q |
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| T |
1350687 |
ctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc |
1350615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 43364468 - 43364537
Alignment:
| Q |
65 |
tttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcatcat |
134 |
Q |
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| T |
43364468 |
tttaatctgcgggcaaattcttccacttccctatcaattcttgcttgtaaggccggatcaatctcatcat |
43364537 |
T |
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