View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16838_low_1 (Length: 457)

Name: NF16838_low_1
Description: NF16838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16838_low_1
NF16838_low_1
[»] chr5 (2 HSPs)
chr5 (61-439)||(39122668-39123047)
chr5 (13-41)||(39122609-39122637)
[»] chr8 (2 HSPs)
chr8 (176-235)||(28412579-28412638)
chr8 (286-322)||(34221065-34221101)
[»] chr6 (2 HSPs)
chr6 (253-322)||(9422378-9422447)
chr6 (253-319)||(31612616-31612682)
[»] chr3 (3 HSPs)
chr3 (195-322)||(1386436-1386562)
chr3 (259-322)||(50976719-50976782)
chr3 (259-322)||(51079851-51079914)
[»] chr7 (1 HSPs)
chr7 (268-313)||(35586468-35586513)
[»] chr1 (1 HSPs)
chr1 (250-314)||(9850568-9850631)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 61 - 439
Target Start/End: Original strand, 39122668 - 39123047
Alignment:
Q  61 aaactactcacaggaatatgagtgtttgagtgctt-attgttataaa-tcatatgaaaaatcttcagcttttgacttaatccatgatcataccatatgag 158  Q
    |||||| ||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39122668 aaactattcataggaatatgagtggttgagtgcttcattgttataaaatcatatgaaaaatcttcagcttttgacttaatccatgatcataccatatgag 39122767  T
Q  159 ttatactgtgtccaggtgtgtacgagttaaacaatcctaattactaaacaccacatacttacgatgcttccaaattgagtaaatgtttatcaatcaaatc 258  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  39122768 ttatactgtgttcaggtgtgtatgagttaaacaatcctaattactaaacaccacatacttacgatgcttttaaattgagtaaatgtttatcaatcaaatc 39122867  T
Q  259 gcatgaaatcattcattcactttctttccttgagaaaccaaacctatgaattgaactgcatgacnnnnnnnnntatttatcattatacaactaatttcta 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||| |||||||||| |||    
T  39122868 gcatgaaatcattcattcactttctttccttgagaaaccaaacctatgaattgaactgcatgac-aaaaaaaatatttatcattacacaactaattccta 39122966  T
Q  359 accatgataaaacatctacacacaactttctagaaccagaacaatcaaagaataaatgattagttatttcggtcatattac 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39122967 accatgataaaacatctacacacaactttctagaaccagaacaatcaatgaataaatgattagttatttcggtcatattac 39123047  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 39122609 - 39122637
Alignment:
Q  13 cacagaaaacaacggaatttccaaatgaa 41  Q
    |||||||||||||||||||||||||||||    
T  39122609 cacagaaaacaacggaatttccaaatgaa 39122637  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 28412579 - 28412638
Alignment:
Q  176 gtgtacgagttaaacaatcctaattactaaacaccacatacttacgatgcttccaaattg 235  Q
    ||||||||| ||||||||||| |||| ||||||||||||| ||| |||||||||||||||    
T  28412579 gtgtacgagataaacaatcctgattattaaacaccacataattaggatgcttccaaattg 28412638  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 34221101 - 34221065
Alignment:
Q  286 ccttgagaaaccaaacctatgaattgaactgcatgac 322  Q
    |||||||||||||||| ||||||||||||||||||||    
T  34221101 ccttgagaaaccaaacatatgaattgaactgcatgac 34221065  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 9422447 - 9422378
Alignment:
Q  253 caaatcgcatgaaatcattcattcactttctttccttgagaaaccaaacctatgaattgaactgcatgac 322  Q
    |||||| | ||||| ||||| || ||||||||| ||||||||| |||||| |||||||||||||||||||    
T  9422447 caaatcacgtgaaaacattcctttactttcttttcttgagaaatcaaacccatgaattgaactgcatgac 9422378  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 31612682 - 31612616
Alignment:
Q  253 caaatcgcatgaaatcattcattcactttctttccttgagaaaccaaacctatgaattgaactgcat 319  Q
    ||||| |||||||| |||| |||||||||||| || ||||||||||||||||| || ||||| ||||    
T  31612682 caaattgcatgaaagcatttattcactttcttaccatgagaaaccaaacctataaactgaaccgcat 31612616  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 322
Target Start/End: Original strand, 1386436 - 1386562
Alignment:
Q  195 ctaattactaaacaccacatacttacgatgcttccaaattgagtaaatgtttatcaatcaaatcgcatgaaatcattcattcactttctttccttgagaa 294  Q
    |||||| | |||||| ||||| |||||||  ||||||||| |  |||||  ||| ||  ||||| ||||||| ||||||| ||||||||||| |||| ||    
T  1386436 ctaattgcaaaacacaacatagttacgataattccaaatttatcaaatgcatattaactaaatcacatgaaaacattcatccactttctttctttga-aa 1386534  T
Q  295 accaaacctatgaattgaactgcatgac 322  Q
    | ||||| |||||||| |||||||||||    
T  1386535 atcaaacatatgaattaaactgcatgac 1386562  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 50976719 - 50976782
Alignment:
Q  259 gcatgaaatcattcattcactttctttccttgagaaaccaaacctatgaattgaactgcatgac 322  Q
    ||||||||  |||| |||| |||||||| |||||||| ||||| |||||||||||| |||||||    
T  50976719 gcatgaaagtattccttcaatttctttcattgagaaatcaaacttatgaattgaaccgcatgac 50976782  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 51079851 - 51079914
Alignment:
Q  259 gcatgaaatcattcattcactttctttccttgagaaaccaaacctatgaattgaactgcatgac 322  Q
    ||||||||  |||| |||| |||||||| |||||||| ||||| |||||||||||| |||||||    
T  51079851 gcatgaaagtattccttcaatttctttcattgagaaatcaaacttatgaattgaaccgcatgac 51079914  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 35586513 - 35586468
Alignment:
Q  268 cattcattcactttctttccttgagaaaccaaacctatgaattgaa 313  Q
    ||||| |||||||||||| ||||||||| |||| ||||||||||||    
T  35586513 cattctttcactttcttttcttgagaaatcaaaactatgaattgaa 35586468  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 9850631 - 9850568
Alignment:
Q  250 aatcaaatcgcatgaaatcattcattcactttctttccttgagaaaccaaacctatgaattgaac 314  Q
    ||||||| | |||||||||||||||||||||| ||  | | ||||||||||||| ||||||||||    
T  9850631 aatcaaaacacatgaaatcattcattcacttt-ttctcataagaaaccaaacctgtgaattgaac 9850568  T

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