View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16838_low_11 (Length: 220)

Name: NF16838_low_11
Description: NF16838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16838_low_11
NF16838_low_11
[»] chr2 (1 HSPs)
chr2 (41-186)||(31997868-31998013)
[»] chr6 (1 HSPs)
chr6 (41-186)||(31100332-31100477)
[»] chr5 (2 HSPs)
chr5 (41-186)||(7819237-7819382)
chr5 (41-137)||(19358063-19358159)
[»] chr1 (3 HSPs)
chr1 (41-187)||(35601300-35601438)
chr1 (136-179)||(50234565-50234608)
chr1 (123-173)||(7445901-7445951)
[»] chr3 (1 HSPs)
chr3 (136-179)||(46954199-46954242)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 31998013 - 31997868
Alignment:
Q  41 agaaagtttccatggcgtcgcttctaatcaaagggaggagatcagatggtggagtaacatggataaagaggtcgtcgttggagttggccccaagctttgc 140  Q
    |||| ||||||||||||||||||||||||||||||||||| || |  || |||||| |||| ||| | || || || ||||||||||||| | |||| ||    
T  31998013 agaaggtttccatggcgtcgcttctaatcaaagggaggaggtcggtcggaggagtagcatgaatagaaagatcttcattggagttggccctaggcttcgc 31997914  T
Q  141 catgaagtcggcgcattggtttccttcacggaggcaatgattaatg 186  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  31997913 catgaagtcggcgcattgatttccttcacggaggcaatgatgaatg 31997868  T

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Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 31100332 - 31100477
Alignment:
Q  41 agaaagtttccatggcgtcgcttctaatcaaagggaggagatcagatggtggagtaacatggataaagaggtcgtcgttggagttggccccaagctttgc 140  Q
    ||||||||  ||||||||||||||||||||||||||| |  || |  || |||||| |||| ||| | || || || ||||||||||||||| |||| ||    
T  31100332 agaaagttctcatggcgtcgcttctaatcaaagggagtaagtcggtcggaggagtagcatgaatagaaagatcttcattggagttggccccatgcttcgc 31100431  T
Q  141 catgaagtcggcgcattggtttccttcacggaggcaatgattaatg 186  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  31100432 catgaagtcggcgcattgatttccttcacggaggcaatgatgaatg 31100477  T

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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 7819382 - 7819237
Alignment:
Q  41 agaaagtttccatggcgtcgcttctaatcaaagggaggagatcagatggtggagtaacatggataaagaggtcgtcgttggagttggccccaagctttgc 140  Q
    |||| ||| ||| |||||| ||||||||||||||||| || || |  || |||||| |||| ||  | || || || |||||||||||||||||||| ||    
T  7819382 agaaggttcccagggcgtcacttctaatcaaagggagtaggtcggtcggaggagtagcatgaatggaaagatcttcattggagttggccccaagcttcgc 7819283  T
Q  141 catgaagtcggcgcattggtttccttcacggaggcaatgattaatg 186  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  7819282 catgaagtcggcgcattgatttccttcacggaggcaatgatgaatg 7819237  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 19358063 - 19358159
Alignment:
Q  41 agaaagtttccatggcgtcgcttctaatcaaagggaggagatcagatggtggagtaacatggataaagaggtcgtcgttggagttggccccaagctt 137  Q
    |||| ||| ||||||||||||||||||||||||||||||| || |  || | |||| |||| ||| | || || || ||| ||||||||||||||||    
T  19358063 agaaggttcccatggcgtcgcttctaatcaaagggaggaggtcggtcggagcagtagcatgaatagaaagatcttcattgaagttggccccaagctt 19358159  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 35601438 - 35601300
Alignment:
Q  41 agaaagtttccatggcgtcgcttctaatcaaagggaggagatcagat-ggtggagtaacatggataaagaggtcgtcgttggagttggccccaagctttg 139  Q
    |||||||| |||| ||||||||||||||||||||||||||||| ||| || |||||| ||||     |||    ||  |||||||||||||||| |||||    
T  35601438 agaaagttcccattgcgtcgcttctaatcaaagggaggagatc-gatcggaggagtagcatg-----aga---agtgattggagttggccccaatctttg 35601348  T
Q  140 ccatgaagtcggcgcattggtttccttcacggaggcaatgattaatgg 187  Q
    ||||| |||| |  ||||| |||||||||||||| ||||||| |||||    
T  35601347 ccatgtagtcagtacattgatttccttcacggagacaatgatgaatgg 35601300  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 50234565 - 50234608
Alignment:
Q  136 tttgccatgaagtcggcgcattggtttccttcacggaggcaatg 179  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  50234565 tttgccatgaaatcagcgcattggtttccttcacggaggcaatg 50234608  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 7445901 - 7445951
Alignment:
Q  123 gttggccccaagctttgccatgaagtcggcgcattggtttccttcacggag 173  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||||    
T  7445901 gttggccccaagcttcgccatgaaatcggcgcactgatttccttcacggag 7445951  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 46954199 - 46954242
Alignment:
Q  136 tttgccatgaagtcggcgcattggtttccttcacggaggcaatg 179  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  46954199 tttgccatgaaatcagcgcattggtttccttcacggaggcaatg 46954242  T

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