View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16838_low_5 (Length: 317)
Name: NF16838_low_5
Description: NF16838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16838_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 11589129 - 11589409
Alignment:
| Q |
9 |
atcatcaaggaagaaagttattatggcataggaatgagtagcatatataggggatggaggcgagttcatagcagaaaaaatgacaaggttttaaggatta |
108 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11589129 |
atcatcaaggaacaaagttgttatggcataggaatgagtagcata----ggggatggatgcgagttcatagcagaaaaaatgacaaggttttaaggatta |
11589224 |
T |
|
| Q |
109 |
ccacaacctcataaactgaaacttgaggcttaaaggaggtgatgatttgatttgatatt-aacttgattgtaaacaaggggaggaaattctctccggtgg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
11589225 |
ccacaacctcataaactgaaacttgaggctcaaaggaggtgatgatttgatttgatattaaacttgattgtaaataaggggaggaaa------------- |
11589311 |
T |
|
| Q |
208 |
tttctctctcatgtgtaatcaagaccctccatcaaataggtgagacaatatgttgtattattaaaaagggagagagagtgtaactaaaggtggatgatg |
306 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11589312 |
-ttctctctcatgtgtaatcgagaccctccatcaaataggtgagacgatatgttgtattattaaaaagggagagagagtgtaattaaaggtggatgatg |
11589409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 4860015 - 4860090
Alignment:
| Q |
186 |
gggaggaaattctctccggtggtttctctctcatgtgtaatcaagaccctccatcaaataggtgagacaatatgtt |
261 |
Q |
| |
|
||||||| ||| |||| ||| ||| |||||||||||||||| ||||||||||| ||||| |||||| ||| |||| |
|
|
| T |
4860015 |
gggaggagattgtctcgtgtgatttttctctcatgtgtaatccagaccctccattaaatatgtgagataatgtgtt |
4860090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 4880023 - 4880098
Alignment:
| Q |
186 |
gggaggaaattctctccggtggtttctctctcatgtgtaatcaagaccctccatcaaataggtgagacaatatgtt |
261 |
Q |
| |
|
||||||| ||| |||| ||| ||| |||||||||||||||| ||||||||||| ||||| |||||| ||| |||| |
|
|
| T |
4880023 |
gggaggagattgtctcgtgtgatttttctctcatgtgtaatccagaccctccattaaatatgtgagataatgtgtt |
4880098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 30390299 - 30390209
Alignment:
| Q |
212 |
tctctcatgtgtaatcaagaccctccatcaaataggtgagacaatatgt-tgtattattaaaaagggagagagagtgtaactaaaggtggat |
302 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||| | ||| ||| |||| || ||||| || ||||||||||||| ||||||||||| |
|
|
| T |
30390299 |
tctctcatgtgtaatctaagccctccattaaataggtgatagaatgtgtctgtaataataaaa-ggaagagagagtgtaattaaaggtggat |
30390209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University