View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16838_low_6 (Length: 286)
Name: NF16838_low_6
Description: NF16838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16838_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 7901472 - 7901204
Alignment:
| Q |
1 |
cttcacttgaatctgtagaaagaacgaaatgctattaagggaaccatgcattgctagctatagtggttaaggtatgaatatgatcgaaatataataactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
7901472 |
cttcacttgaatctgtagaaagaacgaaatgctattaagggaaccatgcattgctagctatagtagttaaggtatgaatatgatcaaaatataataactc |
7901373 |
T |
|
| Q |
101 |
acatcaaactggtatttctttatggcagcttcagatgaagagattaaaccaacaaagagaaataagagaaagtttaatacagacatgaaacttcccaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901372 |
acatcaaactggtatttctttatggcagcttcagatgaagagattaaaccaacaaagagaaataagagaaagtttaatacagacatgaaacttcccaagc |
7901273 |
T |
|
| Q |
201 |
ttgccattatgttctgcttgatgtttaacttctttttacttattttgaatcttgtgagtacagatacat |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901272 |
ttgccattatgttctgcttgatgtttaacttctttttacttattttgaatcttgtgagtacagatacat |
7901204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 31213507 - 31213273
Alignment:
| Q |
6 |
cttgaatctgtagaaagaacgaaa-tgctattaagggaaccatgcattgctagctatagt-ggttaaggta---tgaatatgatcgaaatataataactc |
100 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| ||||||| | ||||||| ||| |||||| ||||||| |
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| T |
31213507 |
cttgaatctgtagaaagaacaaaaatgctattaagggaaccttgcattgctagctatagtcagttaaggcatgctgaatattatcaaaatattataactc |
31213408 |
T |
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| Q |
101 |
acatcaaactggtatttctttatggcagcttcagatgaagagattaaaccaacaaagagaaataagagaaagtttaatacagacatgaaacttcccaagc |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
31213407 |
acatcaaactggtatttccttatggcagcttcagatgaagagaataaaccaacaaagagaaataacagaaagtttaatacagacgtgaaacttcccaagc |
31213308 |
T |
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| Q |
201 |
ttgccattatgttctgcttgatgtttaacttcttt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31213307 |
ttgccattatgttctgcttgatgtttaacttcttt |
31213273 |
T |
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