View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16839_high_11 (Length: 301)
Name: NF16839_high_11
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 6141206 - 6141435
Alignment:
| Q |
30 |
gttccttgataaaaagattacannnnnnnnaaagtattaattaactcataatattgttcgacacacatataaaagttgaacatgaattcctnnnnnnnnn |
129 |
Q |
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| T |
6141206 |
gttccttgataaaaagattacattttttttaaagtattaattaactcataatattgttagacacacatataaaagttgaacatgaattcctaacaaaaaa |
6141305 |
T |
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| Q |
130 |
nnnnnnnnntaaacgggaacatgaagttactataatttggaaggtcagtgtttatttttgcttagataagaagtggactatccacctagtttaagagaca |
229 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6141306 |
---------taaacgggaacatgaagttactataatttagaaggtcagtgtttatttttgcttagataagaagtggactatccacctagtttaagagaca |
6141396 |
T |
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| Q |
230 |
tattttcctcgtctccaacatcggttaatatgtacatgt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
6141397 |
tattttcctcgtctccaacatcggttaatatgtacatgt |
6141435 |
T |
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