View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16839_high_9 (Length: 364)
Name: NF16839_high_9
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 215 - 355
Target Start/End: Original strand, 48415684 - 48415824
Alignment:
| Q |
215 |
gatactctggcattggatccttcgcattcgatgtaacgatttacaataatgtcacccaaagaatgtgtttgttgttgttgtgatggttgaaatttatgct |
314 |
Q |
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| T |
48415684 |
gatactctggcattggatccttcgcattcaatgtaacgatttacaataatgtcacccaaagaatgtgtttgttgttgttgtgatggttgaaatttatgct |
48415783 |
T |
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| Q |
315 |
ggtgtgcctcatgtgattgataaaaatgttgatattcttcg |
355 |
Q |
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| T |
48415784 |
ggtgtacctcatgtgattgataaaaatgttgatattcttcg |
48415824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 48415475 - 48415604
Alignment:
| Q |
19 |
ctaaccagatttgtacatttattccgggctcattgtacag-------aacatgtcatataatgtggctcagaagagtttatatgatggtgttagttttat |
111 |
Q |
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| T |
48415475 |
ctaaccagatttgtacatttattctgggctcattgtacagttatcagaacatgtcatataatgtggctcagaagagtttatatgatggtgttagttttat |
48415574 |
T |
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| Q |
112 |
aaagaacggtctatataactatatgttgag |
141 |
Q |
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| T |
48415575 |
aaagaacggtctatataactatatgttgag |
48415604 |
T |
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