View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16839_low_11 (Length: 337)
Name: NF16839_low_11
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 30369427 - 30369756
Alignment:
| Q |
1 |
taaaagcaaattagtgtcattttcatagtctataacgcattgttttttattatttcttt-cttgaaagcaaactcatggtattttattcataataatcaa |
99 |
Q |
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| T |
30369427 |
taaaagcaaattagtgtcattttcatagtctataacgcattgttttttattattttttttcttgcaagcaaactcatggtattttattcataataatcaa |
30369526 |
T |
|
| Q |
100 |
tgttttaaaaa-ttggtttggtcttgttggatctttaatttacagatcaaacaattggatcattgatttgattcaacagcatgattaaatcaaatatttt |
198 |
Q |
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| T |
30369527 |
ttttttaaaaaattggtttggtcttgttggatctttgatttacatatcaaacaattggatcattaattg-----aacaacatgattaaatcaaatatttt |
30369621 |
T |
|
| Q |
199 |
catagtttataatgcaactcgttagtatttcctatttattagtaatatctcacaaacatttatccctccgaccagcacctcaataaacgtcttaaatgag |
298 |
Q |
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| T |
30369622 |
catagtttataatgcaactcgttagcattttctatttattagtaatatctcacagacgcttatccctccgaccagcacctcaataaacctcttaaatgag |
30369721 |
T |
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| Q |
299 |
attcattaatcatttatcaatatattcatttcagt |
333 |
Q |
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| T |
30369722 |
attcattaatcatttatcaatatattcatttcagt |
30369756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 30365672 - 30365720
Alignment:
| Q |
65 |
aagcaaactcatggtattttattcataataatcaatgttttaaaaattg |
113 |
Q |
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| T |
30365672 |
aagcaaactcatggtgtttcattcctaataatcaatgttttaaaaattg |
30365720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 30607454 - 30607495
Alignment:
| Q |
68 |
caaactcatggtattttattcataataatcaatgttttaaaa |
109 |
Q |
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| T |
30607454 |
caaactcatggtatttaatttataataatcaatgttttaaaa |
30607495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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