View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16839_low_13 (Length: 299)
Name: NF16839_low_13
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 3110098 - 3110171
Alignment:
| Q |
209 |
gagtaattacaagtgagaagcaattatttatttactt-tcaagcacgtaacaagaacctctacaaatttactat |
281 |
Q |
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| T |
3110098 |
gagtaattacaagtgagaagcaattatttatttacttcacaagcacgtaacaagaacctctacaaatttactat |
3110171 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 26271681 - 26271614
Alignment:
| Q |
215 |
ttacaagtgagaagcaattatttatttactt-tcaagcacgtaacaagaacctctacaaatttactat |
281 |
Q |
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||||||||||||| ||||||||||||| || ||| |||| ||||||||||||||||||||||||||| |
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| T |
26271681 |
ttacaagtgagaatcaattatttatttgattctcatgcacctaacaagaacctctacaaatttactat |
26271614 |
T |
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