View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16839_low_14 (Length: 295)

Name: NF16839_low_14
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16839_low_14
NF16839_low_14
[»] chr6 (1 HSPs)
chr6 (41-279)||(30059312-30059552)
[»] chr2 (7 HSPs)
chr2 (1-38)||(35074010-35074047)
chr2 (1-39)||(43014481-43014519)
chr2 (1-38)||(25204685-25204722)
chr2 (1-38)||(43009887-43009924)
chr2 (1-38)||(43012184-43012221)
chr2 (193-257)||(15061959-15062023)
chr2 (1-36)||(25199782-25199817)
[»] chr3 (1 HSPs)
chr3 (1-38)||(43679516-43679553)
[»] chr1 (2 HSPs)
chr1 (1-38)||(25672597-25672634)
chr1 (1-38)||(25677444-25677481)
[»] chr8 (1 HSPs)
chr8 (1-38)||(15091901-15091938)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 41 - 279
Target Start/End: Original strand, 30059312 - 30059552
Alignment:
Q  41 tatgacgaggtgcccatgtacaacattgaa--cttgaaaccatcaggatagggtaggagttaatgaaatgagatttctctcttctttatctctctcaaat 138  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  30059312 tatgacggggtgcccatgtacaacattgaatacttgaaaccatcaagatggggtaggagttaaagaaatgagatttctctcttccttatctctctcaaat 30059411  T
Q  139 tctcacctgcttattctatcattatacattatctataactaactacggctaagctcacccttcctcactcattacctcactactcatttacttcttttta 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30059412 tctcacctgcttattctatcattatacattatctacaactaactacggctaagctcacccttcctcactcattacctcactactcatttacttcttttta 30059511  T
Q  239 gaatagattttccatattttagggattccatataatggaat 279  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  30059512 gaatagactttccatattttagggattccatataatggaat 30059552  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35074010 - 35074047
Alignment:
Q  1 ttgcaaaagcctcatctctataattctgatctctatca 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35074010 ttgcaaaagcctcatctctataattctgatctctatca 35074047  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43014481 - 43014519
Alignment:
Q  1 ttgcaaaagcctcatctctataattctgatctctatcag 39  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  43014481 ttgcaaaagcctcatctctataattctgatctttatcag 43014519  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25204722 - 25204685
Alignment:
Q  1 ttgcaaaagcctcatctctataattctgatctctatca 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  25204722 ttgcaaaagtctcatctctataattctgatctctatca 25204685  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43009887 - 43009924
Alignment:
Q  1 ttgcaaaagcctcatctctataattctgatctctatca 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  43009887 ttgcaaaagcctcatctctataattctgatctttatca 43009924  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43012184 - 43012221
Alignment:
Q  1 ttgcaaaagcctcatctctataattctgatctctatca 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  43012184 ttgcaaaagcctcatctctataattctgatctttatca 43012221  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 15061959 - 15062023
Alignment:
Q  193 tcacccttcctcactcattacctcactactcatttacttctttttagaatagattttccatattt 257  Q
    |||| |||| |||||||||||||||| |||||||| ||  ||| ||||||||| |||||||||||    
T  15061959 tcacgcttcttcactcattacctcacaactcattttctcttttctagaatagactttccatattt 15062023  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 25199817 - 25199782
Alignment:
Q  1 ttgcaaaagcctcatctctataattctgatctctat 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  25199817 ttgcaaaagtctcatctctataattctgatctctat 25199782  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43679516 - 43679553
Alignment:
Q  1 ttgcaaaagcctcatctctataattctgatctctatca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43679516 ttgcaaaagcctcatctctataatgctgatctctatca 43679553  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25672634 - 25672597
Alignment:
Q  1 ttgcaaaagcctcatctctataattctgatctctatca 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  25672634 ttgcaaaagcctcatctctataattctgatctttatca 25672597  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 25677481 - 25677444
Alignment:
Q  1 ttgcaaaagcctcatctctataattctgatctctatca 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  25677481 ttgcaaaagcctcatctctataattctgatctttatca 25677444  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15091938 - 15091901
Alignment:
Q  1 ttgcaaaagcctcatctctataattctgatctctatca 38  Q
    ||||||||||||||||||||||||| || |||||||||    
T  15091938 ttgcaaaagcctcatctctataattttgttctctatca 15091901  T

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