View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16839_low_17 (Length: 252)
Name: NF16839_low_17
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 48999851 - 48999624
Alignment:
| Q |
11 |
agaatatcttgccttctactttctttctgctcgtgatgctcctgagctattcacaagcataaaatcaaccttcccttatctaaacatgacgatttatcac |
110 |
Q |
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| T |
48999851 |
agaaaatcttgccttctactttctttctgctcatggtgctcctgaactattcacaagcataaaatcaaccttcccttatctaaacatgacgatttatcac |
48999752 |
T |
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| Q |
111 |
tttaattctgatcgtgttcgcggtaagatatcaaagtccattagaaaagcattggatcaacctttgaattatgcaaggatatatcttgcagatacaatac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48999751 |
tttaattctgatcgtgttcgcggtaagatatcaaagtccattagaaaagcattggatcaacctttgaattatgcaaggatatatcttgcagatacaatac |
48999652 |
T |
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| Q |
211 |
cagaaaatgtacaacgtgtgatatattt |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48999651 |
cagaaaatgtacaacgtgtgatatattt |
48999624 |
T |
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