View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16839_low_2 (Length: 574)
Name: NF16839_low_2
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 140 - 553
Target Start/End: Complemental strand, 13887235 - 13886811
Alignment:
| Q |
140 |
taaaaactgcattgaaagaaggagtttgaagacacattgaacacttgcatatgccagatattgttgaaatgaatacaaagtgtctagtgatatgtggagc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887235 |
taaaaactgcattgaaagaaggagtttgaagacacgttgaacacttgcatatgccagatattgttgaaatgaatacaaagtgtctagtgatatgtggagc |
13887136 |
T |
|
| Q |
240 |
aaaactagcaacaaccaaactagagtgattatacatacccaaattcgaggagactcactttcttaccaactaccttatgatgtttagttacttcaccata |
339 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13887135 |
aaaattagaaacaaccaacctagagtgattatacatacccaaattcgaggagactcactttcttaccaactaccttatgatgtttagttacttcaccata |
13887036 |
T |
|
| Q |
340 |
acctcttcaactttttgagtgatcattttctcactcttgaagattcacttgcctc-----------taatttacgtaatcctattagttattccatactt |
428 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
13887035 |
acctcttcaacttttggagtgatcattttctcactcttgaagattcacttgcctcaattacccttggattttacgtaatcctattagttattccatactt |
13886936 |
T |
|
| Q |
429 |
tcttcaaccccttaaatgcgtatatctgcctttcgaacaatttattgctctcaactaaaggataacacacaatgactccatagttgcaccattatgatgc |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |||| |||||| |
|
|
| T |
13886935 |
tcttcaaccccttaaatgcgtatatctgcctttcgaacaatttattgctctcaactagaggataacacacaacgactacatagttgcatcattctgatgc |
13886836 |
T |
|
| Q |
529 |
caccatttgtttccttttaatccca |
553 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13886835 |
caccatttgtttccttttaatccca |
13886811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 13887444 - 13887395
Alignment:
| Q |
2 |
atatcatgaaaagcaaggaaaacatctaatgaatgtaattctatccactgag |
53 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
13887444 |
atatcatgaaaagccaagaa--catctaatgaatgtaattctatccactgag |
13887395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 538
Target Start/End: Complemental strand, 16136347 - 16136282
Alignment:
| Q |
472 |
attgctctcaactaaaggataacacacaatgactccatagttgcaccattatgatgccaccatttgt |
538 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||| |||||||| | |||| | |||||||||||||| |
|
|
| T |
16136347 |
attgctttcaactaaagcataacacacaaggactacatagttgta-cattcttatgccaccatttgt |
16136282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University