View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16839_low_20 (Length: 212)
Name: NF16839_low_20
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 36058342 - 36058160
Alignment:
| Q |
15 |
atcaaaggagttggcagagattgagaacccaaatgaagctaaaattgaaaagtgggagcaatacttgaagtgattatcaagacgtgagacgtccatacat |
114 |
Q |
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| T |
36058342 |
atcaaaggagttggcagagattgagaacccaaatgaagctaaaattgaaaagtgggagcaatacttgaagtgattatcaagacgtgagacgtccgtacat |
36058243 |
T |
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| Q |
115 |
acttatacttgaagtgattatgggatggattactaagaatgaaagtgctaagaagttccttgaaactatagagagatttattt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36058242 |
acttatacttgaagtgattatgggatggattactaagaatgaaagtgctaagaagttccttgaaactatagagagatttattt |
36058160 |
T |
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