View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16839_low_21 (Length: 203)
Name: NF16839_low_21
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_low_21 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: scaffold0393 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 12563 - 12739
Alignment:
| Q |
13 |
tatgttagcttcattggttgcatctaattgttggctaaaatatattaatattgttcgctttgtaaattttcatgacagtgtaaggaatcattcattccct |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12563 |
tatgtttgcttcattggttgcatctaattgttggctaaaatatattaatattgttcgttttgtaaattttcatgacagtgtaaggaatcattcattccct |
12662 |
T |
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| Q |
113 |
tgattgaaactttgatgtgcatattctccattttcttaggttacaggggaatccaggaaaaaagaccaatatctgtg |
189 |
Q |
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| T |
12663 |
tgattgaaactgtgatgtgcatattctccattttcttaggttacaggggaatccaggaaaaaagaccaatatctgtg |
12739 |
T |
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Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 2410186 - 2410362
Alignment:
| Q |
13 |
tatgttagcttcattggttgcatctaattgttggctaaaatatattaatattgttcgctttgtaaattttcatgacagtgtaaggaatcattcattccct |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2410186 |
tatgtttgcttcattggttgcatctaattgttggctaaaatatattaatattgttcgttttgtaaattttcatgacagtgtaaggaatcattcattccct |
2410285 |
T |
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| Q |
113 |
tgattgaaactttgatgtgcatattctccattttcttaggttacaggggaatccaggaaaaaagaccaatatctgtg |
189 |
Q |
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| T |
2410286 |
tgattgaaactgtgatgtgcatattctccattttcttaggttacaggggaatccaggaaaaaagaccaatatctgtg |
2410362 |
T |
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Target: chr8 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 30598231 - 30598391
Alignment:
| Q |
15 |
tgttagcttcattggttgcatctaattgttggctaaaatatattaatattgttcgctttgtaaattttcatgacagtgtaaggaatcattcattcccttg |
114 |
Q |
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|||| ||||||||||||||| ||||| ||||||||||||||| |||||||||| ||| || ||||| ||||||| |||||||| |||||||| || ||| |
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| T |
30598231 |
tgtttgcttcattggttgcagctaatagttggctaaaatataataatattgttggctctgggaatttgcatgacaatgtaaggactcattcatgccgttg |
30598330 |
T |
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| Q |
115 |
attgaaactttgatgtgcatattctccattttcttaggttacaggggaatccaggaaaaaa |
175 |
Q |
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||| ||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30598331 |
attcaaattgtgatgtgcatattctccatttgtttaggttacaggggaatccaggaaaaaa |
30598391 |
T |
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