View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16839_low_4 (Length: 460)
Name: NF16839_low_4
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 49083253 - 49082847
Alignment:
| Q |
1 |
tgaagatactttgcacaaaagagttgccagtttctatgttnnnnnnnggaaattttcctcgagtttgcaggagagtgagtggctttgtatatgttaccga |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49083253 |
tgaagatactttgcacaa--gagttgccagtttctatgttaaaaaaaggaaattttcctcaagtttgcaggagagtgagtggctttgtatatgttaccga |
49083156 |
T |
|
| Q |
101 |
agccagacattgaaagtgtaaatagaacattaataatgaaatccgctgaggtaaaagttagctgttgtttcacaactaacagtctgaaactgacatatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49083155 |
agccagacattgaaagtgtaaatagaatattaataatgaaatccgctgaggtaaaagttaactgttgtttcacaactaacagtctgaaactgacatatct |
49083056 |
T |
|
| Q |
201 |
aacaatcctattacactgcttcagtgaaatttagatggcgtgcataggcaaaacttacatgaggctcactannnnnnncactgcattcaatatttttgtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49083055 |
aacaatcctattacactgcttcagtgaaatttagatggcgtgcataggcaaaacttacatgaggctcactatttttttcactgcattcaatatttttgtg |
49082956 |
T |
|
| Q |
301 |
tgtggaagccacggaaccactagaatgattgcttgcagcattgttttctgcagcaacatcaagtttattctgtggaaatgttatgttttgaggaggcatg |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49082955 |
tgtggaagccacagaaccactagaatgattgcttgcagcattgttttctgcagcaacatcaagtttattctgtggaaatgttatattttgaggaggcatg |
49082856 |
T |
|
| Q |
401 |
ataatctgt |
409 |
Q |
| |
|
|||||||| |
|
|
| T |
49082855 |
gtaatctgt |
49082847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University