View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16839_low_6 (Length: 412)
Name: NF16839_low_6
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Complemental strand, 7406341 - 7405953
Alignment:
| Q |
15 |
agtaaatatatttttgttagagagccaaaaacaaggacattgtccaccttgtgattagaccaaaacacttatgtttgagtaggccctggcttagacattg |
114 |
Q |
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| T |
7406341 |
agtaaatatatttttgttagagagccaaaaacaaggacattgtccaccttgtgattagaccaaaacacttatgtttgagtaggccctggcttagacattg |
7406242 |
T |
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| Q |
115 |
caatgacaacatcccatacatatattgcatattttcaatgtgaatatgttctgctgctactgcaaaggtgagtgacgaaaataaggaaacataaataatg |
214 |
Q |
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| T |
7406241 |
caatgacaacatcccatacatatattgcatattttcaatgtgaatatgttcagctgctactgcaaagatgagtgacgaaaataaggaaacataaacaatg |
7406142 |
T |
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| Q |
215 |
atcattagcatatagaacacattatattggtgtttggtagatgcttgaattgaactcattttagtccaacttattggcaacaaatattcaagtcacaatt |
314 |
Q |
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| T |
7406141 |
atcattagcatatagaacacattatattggtgtttggtagatgcttgaattgaactcattttagtccaacttattggcaacaaatattcaagtcacaatt |
7406042 |
T |
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| Q |
315 |
tcacattcttaccttttgctattgctacccattgagacgaaatccttgtgcattctttcccatgttgaatcatatatgtggattttctt |
403 |
Q |
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| T |
7406041 |
tcacattcataccttttgctattgccacccattgagacgaaatccttgtgcattctttcccatgttgaatcatatatgtggattttctt |
7405953 |
T |
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