View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16839_low_8 (Length: 372)
Name: NF16839_low_8
Description: NF16839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16839_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 52767843 - 52767498
Alignment:
| Q |
14 |
agggttagagatatggccacaacaaagcttgaacatttacaatgcgtttggagcgggtcannnnnnnnnnnnnnnnnn---aaattcttcgtttgatgag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
52767843 |
agggttagagatatggccacaacaaagcttgaacatttacaatgcgtttggagtgggtcatagtagtagtagtagtagtagaaattcttcgtttgatgag |
52767744 |
T |
|
| Q |
111 |
tgtgaaagaagatttggtattatgaggcgtagtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52767743 |
tgtgaaagaagatttggtattatgaggcgtagtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaa |
52767644 |
T |
|
| Q |
211 |
cttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgacaacaacatctctctgcgtt |
310 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52767643 |
cttgttgtaaaagtcgagggtttcagtgtcaaacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgacaacaacatctctctgcgtt |
52767544 |
T |
|
| Q |
311 |
accgtttcgtcgtcgagatcatggagacaattacaaacgacacaca |
356 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
52767543 |
accgtttcgtcgtagagatcatgtagacaattacaaacgacacaca |
52767498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 142 - 298
Target Start/End: Complemental strand, 7418666 - 7418510
Alignment:
| Q |
142 |
gtggaggaatgaattgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtca |
241 |
Q |
| |
|
|||| |||||||| ||||| || |||||||||||||| |||||||||||| |||||| ||||| ||||||||||| || |||||||||||||| ||||| |
|
|
| T |
7418666 |
gtggtggaatgaactgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtca |
7418567 |
T |
|
| Q |
242 |
aacacatgttaagagtacttgggttcccgctgctaaacgccgtgaacgacaacaaca |
298 |
Q |
| |
|
||| ||||| || |||||||||||||| |||||||||||||| ||||| || ||||| |
|
|
| T |
7418566 |
aactcatgtgaaaagtacttgggttccagctgctaaacgccgcgaacggcagcaaca |
7418510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 298
Target Start/End: Original strand, 32482965 - 32483108
Alignment:
| Q |
155 |
ttgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaag |
254 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||| || | ||||| |||||||||||||| ||||| || ||||| |||||||| |||||||| |
|
|
| T |
32482965 |
ttgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggttttcagtgtcaaactcatgttaaa |
32483064 |
T |
|
| Q |
255 |
agtacttgggttcccgctgctaaacgccgtgaacgacaacaaca |
298 |
Q |
| |
|
|| ||||||||||| ||| ||| |||||||||||| |||||||| |
|
|
| T |
32483065 |
agcacttgggttcctgcttctagacgccgtgaacgtcaacaaca |
32483108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 8101881 - 8102002
Alignment:
| Q |
155 |
ttgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaag |
254 |
Q |
| |
|
|||||| || ||||| || ||||| |||||||||||| ||| | ||||| |||||||||||||| ||| |||| ||| | |||||||| ||||||||| |
|
|
| T |
8101881 |
ttgtcaagattgtgggaatcaagctaagaaagattgtcctcatatgagatgtagaacttgttgtaagagtagaggttttgattgtcaaactcatgttaag |
8101980 |
T |
|
| Q |
255 |
agtacttgggttcccgctgcta |
276 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
8101981 |
agtacttgggttcctgctgcta |
8102002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 39019486 - 39019366
Alignment:
| Q |
156 |
tgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcaatgtcaaacacatgttaaga |
255 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||| || ||| || |||||||||||||||||| |||| ||| | || | || |||||||||| |
|
|
| T |
39019486 |
tgtcaagattgtggaaaccaagcaaagaaagattgtagtaatagaaggtgtagaacttgttgtaaaagtagaggttttgattgccctactcatgttaaga |
39019387 |
T |
|
| Q |
256 |
gtacttgggttcccgctgcta |
276 |
Q |
| |
|
|||||||||| || ||||||| |
|
|
| T |
39019386 |
gtacttgggtacctgctgcta |
39019366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 13800522 - 13800554
Alignment:
| Q |
325 |
gagatcatggagacaattacaaacgacacacat |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
13800522 |
gagatcatggagacaattacaaacgacacacat |
13800554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 25570259 - 25570291
Alignment:
| Q |
325 |
gagatcatggagacaattacaaacgacacacat |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
25570259 |
gagatcatggagacaattacaaacgacacacat |
25570291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University