View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1683_high_2 (Length: 285)

Name: NF1683_high_2
Description: NF1683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1683_high_2
NF1683_high_2
[»] chr5 (5 HSPs)
chr5 (1-279)||(37077678-37077956)
chr5 (70-193)||(973098-973221)
chr5 (86-159)||(2243315-2243388)
chr5 (1-34)||(7113630-7113663)
chr5 (83-132)||(7215322-7215371)
[»] chr4 (3 HSPs)
chr4 (83-196)||(15131537-15131650)
chr4 (70-132)||(20512694-20512756)
chr4 (84-134)||(25234224-25234274)
[»] chr6 (4 HSPs)
chr6 (75-126)||(32342592-32342643)
chr6 (86-134)||(20206479-20206527)
chr6 (86-134)||(22100502-22100550)
chr6 (1-34)||(32047200-32047233)
[»] chr2 (3 HSPs)
chr2 (86-132)||(16863459-16863505)
chr2 (83-159)||(16576248-16576324)
chr2 (83-185)||(38576750-38576843)
[»] chr3 (1 HSPs)
chr3 (83-132)||(54437806-54437855)
[»] chr7 (2 HSPs)
chr7 (83-196)||(34891533-34891646)
chr7 (83-132)||(29152353-29152402)
[»] chr8 (2 HSPs)
chr8 (104-196)||(33897758-33897850)
chr8 (83-132)||(32166661-32166710)
[»] chr1 (9 HSPs)
chr1 (84-132)||(5500843-5500891)
chr1 (83-118)||(11426631-11426666)
chr1 (86-132)||(52432836-52432882)
chr1 (75-132)||(10775155-10775212)
chr1 (83-132)||(45967852-45967901)
chr1 (83-132)||(46080971-46081020)
chr1 (1-30)||(46080997-46081026)
chr1 (1-30)||(52432687-52432716)
chr1 (78-122)||(42819616-42819660)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 37077678 - 37077956
Alignment:
Q  1 catctcaagaacattaaacttcttcatctcattcgatttataattgaatcatatttattatttggggtaaatgtattttagctttttcttacaatcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077678 catctcaagaacattaaacttcttcatctcattcgatttataattgaatcatatttattatttggggtaaatgtattttagctttttcttacaatcagtt 37077777  T
Q  101 agcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattcatttcaaaattgaatcttatttattatcatt 200  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077778 agcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctctatatcattcatttcaaaattgaatcttatttattatcatt 37077877  T
Q  201 aggagaaaattactctcaattttggaagtagcaacttagacatgtaattatgggtgcgtgcattttgaatcccaataaa 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37077878 aggagaaaattactctcaattttggaagtagcaacttagacatgtaattatgggtgcgtgcattttgaatcccaataaa 37077956  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 193
Target Start/End: Original strand, 973098 - 973221
Alignment:
Q  70 aatgtattttagctttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattc 169  Q
    ||||||| || | ||||||||||||| ||||| |||||| ||||||||||||| ||||||||| |        ||||||||||||||||  || ||||||    
T  973098 aatgtatgttggttttttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattc 973197  T
Q  170 atttcaaaattgaatcttatttat 193  Q
    ||| |||||||||||| |||||||    
T  973198 attacaaaattgaatcatatttat 973221  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 2243388 - 2243315
Alignment:
Q  86 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctc 159  Q
    |||||||||| ||||| |||||||||||||| ||||||||| ||||| |       ||||||||||||||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctc 2243315  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7113663 - 7113630
Alignment:
Q  1 catctcaagaacattaaacttcttcatctcattc 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  7113663 catctcaagaatattaaacttcttcatctcattc 7113630  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 7215371 - 7215322
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    |||||||||||||||  || |||||||||||||| ||||||||| |||||    
T  7215371 tttttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 15131650 - 15131537
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattcatttcaaaattga 182  Q
    |||||||||| |||||||| |||||| ||||||| ||||||||||||||| |       |||||| |||||||||||||| |  ||| ||| |||||| |    
T  15131650 tttttcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatctctatttacttcgtttaaaaattaa 15131551  T
Q  183 atcttatttattat 196  Q
    ||||||||| ||||    
T  15131550 atcttatttcttat 15131537  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 20512756 - 20512694
Alignment:
Q  70 aatgtattttagctttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    |||||||||| | ||||||||||||| ||||| | |||||||||||||||||| || ||||||    
T  20512756 aatgtattttggttttttcttacaattagttatctttttcatctcaaaaacattaagtttctt 20512694  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 25234274 - 25234224
Alignment:
Q  84 ttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaa 134  Q
    ||||||||  |||||||| |||||||||||||| |||||||||||||||||    
T  25234274 ttttcttagcatcagttaccattttcatctcaagaacatcaaatttcttaa 25234224  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 32342592 - 32342643
Alignment:
Q  75 attttagctttttcttacaatcagttagcattttcatctcaaaaacatcaaa 126  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  32342592 attttagttttttcttacaatcaattatcattttcatctcaaaaacatcaaa 32342643  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 20206527 - 20206479
Alignment:
Q  86 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaa 134  Q
    |||||||||||| ||| |||||||||||||| ||||||||| |||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaa 20206479  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 22100550 - 22100502
Alignment:
Q  86 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaa 134  Q
    |||||||||||| ||| |||||||||||||| ||||||||| |||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaacttcttaa 22100502  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32047200 - 32047233
Alignment:
Q  1 catctcaagaacattaaacttcttcatctcattc 34  Q
    |||||||||||||| |||||||||||||||||||    
T  32047200 catctcaagaacatcaaacttcttcatctcattc 32047233  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 16863459 - 16863505
Alignment:
Q  86 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||    
T  16863459 ttcttacaatcagttaccattttcatctcaagaacatcaaatttctt 16863505  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 16576248 - 16576324
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctc 159  Q
    ||||||||||||||| ||| ||||||| |||||| ||||||||| ||||| |       ||||||||||||||||||    
T  16576248 tttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctc 16576324  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 38576843 - 38576750
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattcatttcaaaattga 182  Q
    ||||||||||||||||||| |||||||||||||| |  |||||| |||||         ||||||||||||| |||| ||||| |||||| |||||| ||    
T  38576843 tttttcttacaatcagttaccattttcatctcaatataatcaaacttctt---------cattcaacatgtgttctccatatccttcattccaaaatcga 38576753  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 54437806 - 54437855
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  54437806 tttttcttacaatcagttaccattttaatctcaaaaacatcaaacttctt 54437855  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 34891533 - 34891646
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattcatttcaaaattga 182  Q
    |||||||||| || ||||| |||||| ||||||| ||||||||||||||| |       |||||||||||||||||| || |  ||| ||  ||||||||    
T  34891533 tttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccatttgcttcgttataaaattga 34891632  T
Q  183 atcttatttattat 196  Q
    ||||||||| ||||    
T  34891633 atcttatttgttat 34891646  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 29152402 - 29152353
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    |||||||||||||||||||  ||||||||||||| ||||||||| |||||    
T  29152402 tttttcttacaatcagttactattttcatctcaataacatcaaacttctt 29152353  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 33897758 - 33897850
Alignment:
Q  104 attttcatctcaaaaacatcaaatttcttaannnnnnncattcaacatgtgatctctatatcattcatttcaaaattgaatcttatttattat 196  Q
    ||||||||||||||||||||||| |||||||       |||||||||||| | ||| || |  ||| ||||||||| ||||||||||||||||    
T  33897758 attttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgtaacctccatttatttcgtttcaaaatcgaatcttatttattat 33897850  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 32166710 - 32166661
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    |||||||||| |||| ||| |||||||||||||| ||||||||| |||||    
T  32166710 tttttcttactatcaattatcattttcatctcaagaacatcaaacttctt 32166661  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 5500891 - 5500843
Alignment:
Q  84 ttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    ||||| || ||||||||| |||||| |||||||||||||||||||||||    
T  5500891 ttttcgtataatcagttaccatttttatctcaaaaacatcaaatttctt 5500843  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 11426666 - 11426631
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaa 118  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11426666 tttttcttacaatcagttaccattttcatctcaaaa 11426631  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 52432836 - 52432882
Alignment:
Q  86 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    |||||||||| ||||| ||||||| |||||||||||||||| |||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaacttctt 52432882  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 10775155 - 10775212
Alignment:
Q  75 attttagctttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    ||||||| ||||||||| ||||| ||| ||||||||||| || ||||||||| |||||    
T  10775155 attttagttttttcttagaatcaattaccattttcatcttaagaacatcaaacttctt 10775212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 45967901 - 45967852
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    |||||||||||||| |||| ||||||||| ||||||| || |||||||||    
T  45967901 tttttcttacaatctgttatcattttcatttcaaaaatattaaatttctt 45967852  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 46080971 - 46081020
Alignment:
Q  83 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttctt 132  Q
    ||||||||||||||| ||| |||||||||||||| ||||| ||| |||||    
T  46080971 tttttcttacaatcaattaccattttcatctcaagaacattaaacttctt 46081020  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 46080997 - 46081026
Alignment:
Q  1 catctcaagaacattaaacttcttcatctc 30  Q
    ||||||||||||||||||||||||||||||    
T  46080997 catctcaagaacattaaacttcttcatctc 46081026  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 52432687 - 52432716
Alignment:
Q  1 catctcaagaacattaaacttcttcatctc 30  Q
    ||||||||||||||||||||||||||||||    
T  52432687 catctcaagaacattaaacttcttcatctc 52432716  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 42819616 - 42819660
Alignment:
Q  78 ttagctttttcttacaatcagttagcattttcatctcaaaaacat 122  Q
    |||| ||||||||||||||| ||| |||||||||||||| |||||    
T  42819616 ttagttttttcttacaatcaattatcattttcatctcaagaacat 42819660  T

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